Variant report

Variant	nsv557797
Chromosome Location	chr12:25272027-25341177
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr12:25272177-25272180	K562	blood:	n/a	n/a
2	ARID3A	chr12:25283651-25283967	HepG2	liver:	n/a	n/a
3	ARID3A	chr12:25308060-25308388	HepG2	liver:	n/a	n/a
4	ATF1	chr12:25304482-25304710	K562	blood:	n/a	n/a
5	ATF2	chr12:25310567-25310891	GM12878	blood:	n/a	n/a
6	ATF2	chr12:25307974-25308723	GM12878	blood:	n/a	n/a
7	BATF	chr12:25339370-25339695	GM12878	blood:	n/a	n/a
8	BATF	chr12:25308087-25308566	GM12878	blood:	n/a	n/a
9	BHLHE40	chr12:25339615-25339890	GM12878	blood:	n/a	n/a
10	CEBPB	chr12:25308496-25308803	MCF-7	breast:	n/a	chr12:25308638-25308649
11	CEBPB	chr12:25283592-25283972	Hela-S3	cervix:	n/a	chr12:25283746-25283763
12	CEBPB	chr12:25283582-25283939	H1-hESC	embryonic stem cell:	n/a	chr12:25283746-25283763
13	CEBPB	chr12:25283601-25283928	A549	lung:	n/a	chr12:25283746-25283763
14	CEBPB	chr12:25310091-25310250	K562	blood:	n/a	n/a
15	CEBPB	chr12:25339040-25339251	H1-hESC	embryonic stem cell:	n/a	chr12:25339153-25339166 chr12:25339170-25339181 chr12:25339155-25339164 chr12:25339170-25339183 chr12:25339155-25339164 chr12:25339155-25339164
16	CEBPB	chr12:25283648-25283980	HepG2	liver:	n/a	chr12:25283746-25283763
17	CEBPB	chr12:25315816-25316149	H1-hESC	embryonic stem cell:	n/a	chr12:25315993-25316004
18	CEBPB	chr12:25315842-25316160	ECC-1	luminal epithelium:	n/a	chr12:25315993-25316004
19	CEBPB	chr12:25315829-25316137	A549	lung:	n/a	chr12:25315993-25316004
20	CEBPB	chr12:25283598-25283937	K562	blood:	n/a	chr12:25283746-25283763
21	CEBPB	chr12:25339004-25339708	HepG2	liver:	n/a	chr12:25339153-25339166 chr12:25339170-25339181 chr12:25339155-25339164 chr12:25339170-25339183 chr12:25339155-25339164 chr12:25339155-25339164
22	CEBPB	chr12:25283533-25283988	MCF-7	breast:	n/a	chr12:25283746-25283763
23	CEBPB	chr12:25315828-25316148	HepG2	liver:	n/a	chr12:25315993-25316004
24	CEBPB	chr12:25339046-25339318	A549	lung:	n/a	chr12:25339153-25339166 chr12:25339170-25339181 chr12:25339155-25339164 chr12:25339170-25339183 chr12:25339155-25339164 chr12:25339155-25339164
25	CEBPB	chr12:25283539-25283909	ECC-1	luminal epithelium:	n/a	chr12:25283746-25283763
26	CEBPB	chr12:25308493-25308758	K562	blood:	n/a	chr12:25308638-25308649
27	CEBPB	chr12:25339109-25339310	Hela-S3	cervix:	n/a	chr12:25339153-25339166 chr12:25339170-25339181 chr12:25339155-25339164 chr12:25339170-25339183 chr12:25339155-25339164 chr12:25339155-25339164
28	CEBPB	chr12:25315827-25316157	IMR90	lung:	n/a	chr12:25315993-25316004
29	CEBPB	chr12:25336315-25336320	A549	lung:	n/a	n/a
30	CEBPB	chr12:25315831-25316095	ECC-1	luminal epithelium:	n/a	chr12:25315993-25316004
31	CEBPB	chr12:25315706-25316153	A549	lung:	n/a	chr12:25315993-25316004
32	CEBPB	chr12:25283568-25283950	K562	blood:	n/a	chr12:25283746-25283763
33	CEBPB	chr12:25315833-25316160	A549	lung:	n/a	chr12:25315993-25316004
34	CEBPB	chr12:25338997-25339342	IMR90	lung:	n/a	chr12:25339153-25339166 chr12:25339170-25339181 chr12:25339155-25339164 chr12:25339170-25339183 chr12:25339155-25339164 chr12:25339155-25339164
35	CEBPB	chr12:25283521-25284033	HCT-116	colon:	n/a	chr12:25283746-25283763
36	CEBPB	chr12:25307802-25308798	IMR90	lung:	n/a	chr12:25308638-25308649
37	CEBPB	chr12:25284243-25284585	HepG2	liver:	n/a	n/a
38	CEBPB	chr12:25308512-25308762	H1-hESC	embryonic stem cell:	n/a	chr12:25308638-25308649
39	CEBPB	chr12:25283515-25284098	A549	lung:	n/a	chr12:25283746-25283763
40	CEBPB	chr12:25283568-25283967	IMR90	lung:	n/a	chr12:25283746-25283763
41	CEBPB	chr12:25304380-25304975	IMR90	lung:	n/a	n/a
42	CEBPB	chr12:25339012-25339320	K562	blood:	n/a	chr12:25339153-25339166 chr12:25339170-25339181 chr12:25339155-25339164 chr12:25339170-25339183 chr12:25339155-25339164 chr12:25339155-25339164
43	CEBPB	chr12:25308499-25308748	A549	lung:	n/a	chr12:25308638-25308649
44	CEBPB	chr12:25308460-25308816	HepG2	liver:	n/a	chr12:25308638-25308649
45	CEBPB	chr12:25315812-25316162	K562	blood:	n/a	chr12:25315993-25316004
46	CEBPB	chr12:25315872-25316104	Hela-S3	cervix:	n/a	chr12:25315993-25316004
47	CEBPB	chr12:25308467-25308812	A549	lung:	n/a	chr12:25308638-25308649
48	CEBPB	chr12:25284212-25284668	HepG2	liver:	n/a	chr12:25284651-25284662 chr12:25284651-25284662
49	CEBPB	chr12:25295575-25295638	A549	lung:	n/a	chr12:25295577-25295588
50	CHD1	chr12:25272236-25272257	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr12:25304568-25304618	HIPEpiC	eye:	n/a
2	chr12:25304568-25304618	ProgFib	skin:	n/a
3	chr12:25304568-25304618	NB4	blood:	n/a
4	chr12:25304568-25304618	Jurkat	blood:	n/a
5	chr12:25340920-25340970	NB4	blood:	n/a
6	chr12:25340920-25340970	BE2_C	brain:	n/a
7	chr12:25340920-25340970	IMR90	lung:	fetal
8	chr12:25304568-25304618	NHBE	bronchial:	n/a
9	chr12:25340920-25340970	A549	lung:	n/a
10	chr12:25304568-25304618	HCT-116	colon:	n/a
11	chr12:25340920-25340970	HAEpiC	amniotic membrane:	n/a
12	chr12:25304568-25304618	LNCaP	prostate:	n/a
13	chr12:25304568-25304618	ECC-1	luminal epithelium:	n/a
14	chr12:25340920-25340970	HMEC	breast:	n/a
15	chr12:25340920-25340970	SAEC	small airway:	n/a
16	chr12:25304568-25304618	HAEpiC	amniotic membrane:	n/a
17	chr12:25304568-25304618	BJ	skin:	n/a
18	chr12:25340920-25340970	HPAEpiC	pulmonary alveolar:	n/a
19	chr12:25340920-25340970	Jurkat	blood:	n/a
20	chr12:25304568-25304618	T-47D	breast:	n/a
21	chr12:25304568-25304618	AG04449	skin:	fetal
22	chr12:25304568-25304618	HCF	heart:	n/a
23	chr12:25340920-25340970	Hela-S3	cervix:	n/a
24	chr12:25340920-25340970	NT2-D1	testis:	n/a
25	chr12:25340920-25340970	HCT-116	colon:	n/a
26	chr12:25340920-25340970	MCF-7	breast:	n/a
27	chr12:25340920-25340970	LNCaP	prostate:	n/a
28	chr12:25304568-25304618	PANC-1	pancreas:	n/a
29	chr12:25304568-25304618	AG10803	skin:	n/a
30	chr12:25340920-25340970	SK-N-SH	brain:	n/a
31	chr12:25340920-25340970	AG09319	gingival:	n/a
32	chr12:25340920-25340970	NH-A	brain:	n/a
33	chr12:25340920-25340970	GM12878	blood:	n/a
34	chr12:25340920-25340970	AG10803	skin:	n/a
35	chr12:25340920-25340970	PFSK-1	brain:	n/a
36	chr12:25340920-25340970	HRCEpiC	kidney:	n/a
37	chr12:25304568-25304618	H1-hESC	embryonic stem cell:	embryo
38	chr12:25340920-25340970	HIPEpiC	eye:	n/a
39	chr12:25304568-25304618	AG09309	skin:	n/a
40	chr12:25304568-25304618	SK-N-SH	brain:	n/a
41	chr12:25304568-25304618	GM19239	blood:	n/a
42	chr12:25304568-25304618	SAEC	small airway:	n/a
43	chr12:25340920-25340970	PANC-1	pancreas:	n/a
44	chr12:25340920-25340970	SKMC	muscle:	n/a
45	chr12:25304568-25304618	GM12878	blood:	n/a
46	chr12:25304568-25304618	AG04450	lung:	fetal
47	chr12:25340920-25340970	SK-N-MC	brain:	n/a
48	chr12:25340920-25340970	Caco-2	colon:	n/a
49	chr12:25340920-25340970	HRPEpiC	eye:	n/a
50	chr12:25304568-25304618	SKMC	muscle:	n/a

No.	Distal block	Cell Line	Cell type
1	chr12:25102240..25104571-chr12:25306808..25309937,3	K562	blood:
2	chr12:25308195..25309123-chr12:25363634..25364498,3	MCF-7	breast:
3	chr12:25308057..25308873-chr12:25540076..25541015,4	K562	blood:
4	chr12:25005092..25005668-chr12:25271970..25272610,3	MCF-7	breast:
5	chr12:25293184..25295651-chr12:25296801..25299581,2	K562	blood:
6	chr12:25297460..25298286-chr6:10162370..10163071,2	MCF-7	breast:
7	chr12:25273688..25275976-chr12:25280095..25282092,2	K562	blood:
8	chr12:25143896..25146815-chr12:25280565..25283315,2	MCF-7	breast:
9	chr12:25284083..25286578-chr6:21600707..21602481,2	MCF-7	breast:
10	chr12:25283942..25285554-chr12:25289504..25292032,2	K562	blood:
11	chr12:25293184..25295651-chr12:25296801..25299581,2	K562	blood:
12	chr12:25273688..25275976-chr12:25280095..25282092,2	K562	blood:
13	chr12:25283942..25285554-chr12:25289504..25292032,2	K562	blood:
14	chr12:25282337..25284646-chr12:25539223..25540773,2	K562	blood:
15	chr12:25339080..25340582-chr12:25340786..25343717,2	MCF-7	breast:
16	chr12:25112900..25113752-chr12:25283318..25284098,2	K562	blood:
17	chr12:25144639..25145222-chr12:25283398..25284249,2	MCF-7	breast:
18	chr12:25144178..25145423-chr12:25271630..25272711,4	MCF-7	breast:
19	chr12:25144337..25145003-chr12:25283318..25284116,2	K562	blood:
20	chr12:25102694..25105038-chr12:25299270..25301351,2	MCF-7	breast:
21	chr12:25339039..25341718-chr12:25343903..25345457,2	K562	blood:
22	chr12:25339080..25340582-chr12:25340786..25343717,2	MCF-7	breast:

Variant related genes	Relation type
CASC1	TF binding region
CASC1	CpG island
ENSG00000060982	chromatin interactions
ENSG00000220771	chromatin interactions

Extended variants
information (count: 2055 )
Associated
traits (count: 105 )

Variant overlapped rSNPs/rCNVs (count:2055 , 50 per page) page: 1 2 3 4 5 6 7 ... 42

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2291365	chr12:25272027-25272028	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs375207063	chr12:25272028-25272029	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs188209930	chr12:25272034-25272035	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs555610109	chr12:25272048-25272049	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs201931241	chr12:25272071-25272072	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs201004839	chr12:25272075-25272076	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs374997688	chr12:25272095-25272096	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs138898061	chr12:25272099-25272100	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs376920188	chr12:25272125-25272126	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs142722822	chr12:25272149-25272150	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs34529804	chr12:25272167-25272168	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs371326822	chr12:25272181-25272182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs200338261	chr12:25272197-25272198	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs192960571	chr12:25272198-25272199	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs561577029	chr12:25272245-25272246	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs2291364	chr12:25272297-25272298	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs550591415	chr12:25272337-25272338	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs568745132	chr12:25272339-25272340	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs574229339	chr12:25272340-25272341	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs74073310	chr12:25272356-25272357	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs538915887	chr12:25272367-25272368	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs112131083	chr12:25272369-25272370	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs6487458	chr12:25272457-25272458	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs185176866	chr12:25272461-25272462	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs146931554	chr12:25272474-25272475	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs567267097	chr12:25272493-25272494	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs377193795	chr12:25272520-25272521	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs7304934	chr12:25272599-25272600	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs537738337	chr12:25272622-25272623	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs541920044	chr12:25272655-25272656	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs556552241	chr12:25272675-25272676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs541357511	chr12:25272756-25272757	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs545356976	chr12:25272771-25272772	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs372172671	chr12:25272857-25272858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs147970161	chr12:25272894-25272895	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs141690710	chr12:25272911-25272912	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs543246890	chr12:25272968-25272969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs527830932	chr12:25272991-25272992	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs189528562	chr12:25272999-25273000	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs12228581	chr12:25273087-25273088	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs532065952	chr12:25273103-25273104	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs150527936	chr12:25273142-25273143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs139583152	chr12:25273180-25273181	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs11047847	chr12:25273183-25273184	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs7973365	chr12:25273190-25273191	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs543936108	chr12:25273211-25273212	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs566235050	chr12:25273217-25273218	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs375263473	chr12:25273219-25273220	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs548808837	chr12:25273228-25273229	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs148404369	chr12:25273240-25273241	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:105)

Disease	PMID	Source
Malignant germ cell tumour	17285132	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	18172304	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Myxofibrosarcoma	16751306	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Wilms tumour	21544195	CNVD
Squamous cell cancer	21044232	CNVD
Acute myeloid leukemia	16864856	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Testicular cancer	18059402	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Seminomas	18059402	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Testicular germ cell tumor	18059402	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	21858162	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Myelodysplastic syndrome	21251322	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Cancer	20164919	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	17133270	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Acute myeloid leukemia	20729466	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	16397240	CNVD
Neurodevelopmental disorder	22521361	CNVD
Intracranial aneurysm	16715129	CNVD
Breast cancer	21509527	CNVD
Autism	22102821	CNVD
Follicular lymphoma	18703704	CNVD
Lung cancer	18438408	CNVD
Lung cancer	21911935	CNVD
Breast cancer	22048815	CNVD
Malignant peripheral nerve sheath tumor	19844265	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16272173	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Heart disease	21282601	CNVD
Ovarian cancer	20844748	CNVD
Lung cancer	17925434	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Gastric cancer	24379144	CNVD
Gastric cancer	19545448	CNVD
Lung cancer	20031968	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung adenocarcinoma	19826477	CNVD
Lung cancer	19525976	CNVD
Lung cancer	19826477	CNVD
Non-small cell lung cancer	19451690	CNVD
Non-small cell lung cancer	17504988	CNVD
Bipolar disorder	19114987	CNVD
Lung cancer	19671679	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
Lung cancer	21569311	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Lung adenocarcinoma	17982442	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Ovarian cancer	21720365	CNVD
Cancer	17699850	CNVD
Ovarian cancer	17699850	CNVD
Cancer	20164920	CNVD
Gastric cancer	22315472	CNVD
Adenocarcinoma	19001599	CNVD
Non-small cell lung cancer	19001599	CNVD
Pancreatic cancer	20981101	CNVD
Squamous cell cancer	19001599	CNVD
Acute lymphoblastic leukemia	21680795	CNVD
Lung adenocarcinoma	18379350	CNVD
Lung cancer	18379350	CNVD
Ovarian cancer	22174824	CNVD
Pancreatic cancer	21811562	CNVD
Breast cancer	22522925	CNVD
Cancer	17440070	CNVD

Chromatin state (count:261 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25251800-25274600	Weak transcription	Pancreas	Pancrea
2	chr12:25263800-25288800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr12:25268600-25279400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr12:25274200-25275000	Enhancers	Osteobl	bone
5	chr12:25274400-25275200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr12:25274400-25277600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr12:25274600-25275000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr12:25274600-25275400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr12:25275000-25275200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr12:25275200-25276200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr12:25275200-25277800	Enhancers	HMEC	breast
12	chr12:25276200-25277800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr12:25276800-25277600	Enhancers	NHEK	skin
14	chr12:25277400-25277800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr12:25281800-25282400	Enhancers	Primary B cells from cord blood	blood
16	chr12:25281800-25282400	Enhancers	Primary B cells from peripheral blood	blood
17	chr12:25282000-25282400	Enhancers	GM12878-XiMat	blood
18	chr12:25284400-25284600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr12:25286400-25286600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr12:25286800-25288000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr12:25286800-25304200	Weak transcription	Ovary	ovary
22	chr12:25288000-25289400	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr12:25288000-25289400	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr12:25288000-25289400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr12:25288000-25289600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr12:25288000-25289600	Enhancers	HMEC	breast
27	chr12:25288200-25288600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr12:25288200-25289200	Enhancers	Esophagus	oesophagus
29	chr12:25288200-25289400	Enhancers	NHEK	skin
30	chr12:25288200-25289600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr12:25288400-25288800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr12:25288400-25289000	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr12:25288400-25289000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr12:25288400-25289200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr12:25288400-25289400	Enhancers	Placenta	Placenta
36	chr12:25288600-25288800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr12:25288600-25289000	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr12:25288600-25289200	Enhancers	H1 Cell Line	embryonic stem cell
39	chr12:25288800-25289400	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr12:25288800-25289400	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr12:25288800-25297400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr12:25293000-25293800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
43	chr12:25293800-25303000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr12:25297400-25298400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr12:25304000-25305200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr12:25304000-25305400	Enhancers	Muscle Satellite Cultured Cells	--
47	chr12:25304000-25305400	Enhancers	NHLF	lung
48	chr12:25304000-25305800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr12:25304000-25307400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr12:25304200-25305000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links