Variant report

Variant	nsv559686
Chromosome Location	chr12:86697440-86700407
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 63 )

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10858411	chr12:86697440-86697441	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs11103918	chr12:86697446-86697447	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs149778943	chr12:86697490-86697491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs201254272	chr12:86697496-86697497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs145699550	chr12:86697536-86697537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs530773076	chr12:86697554-86697555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs190601411	chr12:86697571-86697572	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs148964988	chr12:86697601-86697602	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs534300180	chr12:86697623-86697624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs181902976	chr12:86697629-86697630	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs547325813	chr12:86697637-86697638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs567737357	chr12:86697655-86697656	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs565594706	chr12:86697657-86697658	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs12300410	chr12:86697674-86697675	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs555254665	chr12:86697765-86697766	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs576553981	chr12:86697774-86697775	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs115786592	chr12:86697866-86697867	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs11103919	chr12:86697874-86697875	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs145691025	chr12:86697906-86697907	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs551255384	chr12:86697949-86697950	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs185194358	chr12:86697995-86697996	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs188680384	chr12:86697998-86697999	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs374838863	chr12:86698014-86698015	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs7972484	chr12:86698114-86698115	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs569818742	chr12:86698127-86698128	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs537178521	chr12:86698129-86698130	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs146564242	chr12:86698147-86698148	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:63)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Ewing''s sarcoma	21437220	CNVD
Testicular germ cell tumor	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	21949216	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21637783	CNVD
Glioblastoma multiforme	21080181	CNVD
Renal cell carcinoma	19461508	CNVD
Burkitt''s lymphoma	18698080	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Lung cancer	18438408	CNVD
Breast cancer	17899364	CNVD
Cancer	16751803	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
small cell lung cancer	20016488	CNVD
Melanoma	18172304	CNVD
Glioblastoma multiforme	21390271	CNVD
Cancer	20164919	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	18632612	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	22032731	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Ovarian cancer	21720365	CNVD
Acute myeloid leukemia	20729466	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Renal cell carcinoma	18194544	CNVD
lymphocytic leukemia	21291569	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86690600-86698200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links