Variant report

Variant	nsv562558
Chromosome Location	chr13:84723377-84755999
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 170 )
Associated
traits (count: 95 )

Variant overlapped rSNPs/rCNVs (count:170 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs553010992	chr13:84726430-84726431	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs9546621	chr13:84726434-84726435	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs139894992	chr13:84726473-84726474	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs372571733	chr13:84726514-84726515	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs376324258	chr13:84726681-84726682	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs544779312	chr13:84726690-84726691	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs34209855	chr13:84726732-84726733	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs537702373	chr13:84726747-84726748	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs563616367	chr13:84726799-84726800	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs534955650	chr13:84726913-84726914	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs554856339	chr13:84726947-84726948	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs574674769	chr13:84726988-84726989	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs11841283	chr13:84727010-84727011	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs563626750	chr13:84727026-84727027	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs2809153	chr13:84727050-84727051	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs542887253	chr13:84727080-84727081	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs56750003	chr13:84727108-84727109	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs559651488	chr13:84727195-84727196	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs568520740	chr13:84728609-84728610	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs118096175	chr13:84728618-84728619	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs188083620	chr13:84728658-84728659	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs571010323	chr13:84728713-84728714	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs374042634	chr13:84728721-84728722	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs192757621	chr13:84728732-84728733	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs573417342	chr13:84728763-84728764	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs7328302	chr13:84728804-84728805	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs74999227	chr13:84728825-84728826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs575574199	chr13:84728841-84728842	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs184959798	chr13:84728863-84728864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs564255412	chr13:84728895-84728896	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs189424260	chr13:84728933-84728934	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs540099807	chr13:84729032-84729033	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs559804497	chr13:84729037-84729038	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs182007981	chr13:84729055-84729056	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs207474136	chr13:84729072-84729073	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs553074391	chr13:84729078-84729079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs577683966	chr13:84729094-84729095	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs538731446	chr13:84729122-84729123	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs148873158	chr13:84729133-84729134	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs556904873	chr13:84729177-84729178	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs145378949	chr13:84729214-84729215	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs551235392	chr13:84729228-84729229	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs571104241	chr13:84729229-84729230	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs375099374	chr13:84729270-84729271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs535236264	chr13:84729280-84729281	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs115799886	chr13:84729286-84729287	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs185908491	chr13:84729303-84729304	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs535926915	chr13:84729331-84729332	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs369305307	chr13:84729339-84729340	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs4575425	chr13:84729350-84729351	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:95)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Prostate cancer	18632612	CNVD
Colorectal cancer	21586687	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Breast cancer	21858162	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Urothelial cell carcinoma	18451213	CNVD
Developmental delay	19490664	CNVD
Neurodevelopmental disorder	22521361	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Cancer	17160897	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Epilepsy	20502679	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	23813976	CNVD
Osteosarcoma	21215367	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:84726400-84727200	ZNF genes & repeats	Dnd41	blood
2	chr13:84728600-84728800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:84728800-84731600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:84731600-84731800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr13:84731600-84732000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr13:84750400-84751000	Enhancers	Dnd41	blood

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