Variant report

Variant	nsv562568
Chromosome Location	chr13:85616515-85652995
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:85624379..85624909-chr13:86373073..86373588,2	MCF-7	breast:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK6-4	chr13:85642135-85642163	ENSG00000226370
2	lnc-SLITRK6-4	chr13:85639222-85639353	ENSG00000226370
3	lnc-SLITRK6-4	chr13:85649179-85649279	ENSG00000226370
4	lnc-SLITRK6-4	chr13:85650938-85651117	ENSG00000226370
5	lnc-SLITRK6-4	chr13:85652897-85653055	ENSG00000226370

No data

Extended variants
information (count: 368 )
Associated
traits (count: 91 )

Variant overlapped rSNPs/rCNVs (count:368 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs530862794	chr13:85627042-85627043	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs75505072	chr13:85627064-85627065	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs200130999	chr13:85627067-85627068	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs549277137	chr13:85627087-85627088	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs567685709	chr13:85627092-85627093	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs534110712	chr13:85627108-85627109	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs144045206	chr13:85627144-85627145	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs553443758	chr13:85627158-85627159	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs192394845	chr13:85627175-85627176	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs376869463	chr13:85627246-85627247	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs146670148	chr13:85627256-85627257	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs12428635	chr13:85627308-85627309	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs547026957	chr13:85627340-85627341	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs575414808	chr13:85627376-85627377	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs577924386	chr13:85627395-85627396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs377277825	chr13:85627400-85627401	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs542939898	chr13:85627445-85627446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs183731376	chr13:85627446-85627447	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs188097955	chr13:85627494-85627495	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs9566005	chr13:85627504-85627505	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs559401715	chr13:85627609-85627610	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs35590812	chr13:85627676-85627677	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs563634520	chr13:85627681-85627682	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs79939672	chr13:85627738-85627739	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs545074230	chr13:85627787-85627788	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs549341928	chr13:85627788-85627789	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs563503824	chr13:85627829-85627830	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs551015544	chr13:85627832-85627833	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs191842176	chr13:85627836-85627837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs549313749	chr13:85627840-85627841	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs184862593	chr13:85627875-85627876	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs528492789	chr13:85627909-85627910	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs546726531	chr13:85627938-85627939	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs571607738	chr13:85627946-85627947	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs538788848	chr13:85627999-85628000	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs189373940	chr13:85628003-85628004	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs569126897	chr13:85628063-85628064	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs536413559	chr13:85628079-85628080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs1500687	chr13:85628080-85628081	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs536775337	chr13:85628137-85628138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs181966616	chr13:85628181-85628182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs570700196	chr13:85628222-85628223	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs539960277	chr13:85628238-85628239	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs540916966	chr13:85628242-85628243	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs552729379	chr13:85628293-85628294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs377457894	chr13:85628300-85628301	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs539641510	chr13:85628329-85628330	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs577545438	chr13:85628373-85628374	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs555035338	chr13:85628399-85628400	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs9319114	chr13:85628409-85628410	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:91)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Prostate cancer	18632612	CNVD
Colorectal cancer	21586687	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Breast cancer	21858162	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Urothelial cell carcinoma	18451213	CNVD
Developmental delay	19490664	CNVD
Neurodevelopmental disorder	22521361	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Cancer	17160897	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Schizophrenia	21346763	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85627000-85627200	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr13:85627200-85628600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr13:85628600-85629400	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr13:85629400-85631800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr13:85631800-85632000	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr13:85642000-85642800	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr13:85642000-85643200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr13:85643000-85643400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr13:85643000-85643600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr13:85650400-85651200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr13:85651200-85654800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr13:85651400-85652000	Enhancers	Fetal Lung	lung

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