Variant report

Variant	nsv563540
Chromosome Location	chr14:19171334-19376736
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:217)
CpG islands
(count:122)
Chromatin interactive
region (count:0)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:217 , 50 per page) page: 1 2 3 4 5

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BATF	chr14:19183485-19183643	GM12878	blood:	n/a	chr14:19183575-19183586
2	BATF	chr14:19183487-19183665	GM12878	blood:	n/a	chr14:19183575-19183586
3	BCL11A	chr14:19352644-19352904	GM12878	blood:	n/a	n/a
4	BRCA1	chr14:19264643-19264785	GM12878	blood:	n/a	n/a
5	CEBPB	chr14:19225043-19225319	HepG2	liver:	n/a	chr14:19225141-19225152
6	CEBPB	chr14:19303651-19303853	IMR90	lung:	n/a	chr14:19303692-19303703
7	CEBPB	chr14:19303507-19303883	HepG2	liver:	n/a	chr14:19303692-19303703
8	CEBPB	chr14:19292550-19292762	HepG2	liver:	n/a	chr14:19292595-19292606
9	CTCF	chr14:19176587-19176636	GM10266	blood:	n/a	n/a
10	CTCF	chr14:19303734-19303771	LNCaP	prostate:	n/a	n/a
11	CTCF	chr14:19359863-19360106	A549	lung:	n/a	n/a
12	CTCF	chr14:19314929-19315024	LNCaP	prostate:	n/a	n/a
13	CTCF	chr14:19359960-19360110	GM12872	blood:	n/a	n/a
14	CTCF	chr14:19330799-19330831	ProgFib	skin:	n/a	n/a
15	CTCF	chr14:19211105-19211156	LNCaP	prostate:	n/a	n/a
16	CTCF	chr14:19360020-19360170	SAEC	small airway:	n/a	n/a
17	CTCF	chr14:19325270-19325281	GM10248	blood:	n/a	n/a
18	CTCF	chr14:19359980-19360130	K562	blood:	n/a	n/a
19	CTCF	chr14:19356416-19356480	ProgFib	skin:	n/a	n/a
20	CTCF	chr14:19289941-19290030	Lung_OC	lung:	n/a	n/a
21	CTCF	chr14:19173680-19173702	GM10266	blood:	n/a	n/a
22	CTCF	chr14:19360039-19360147	GM10266	blood:	n/a	n/a
23	CTCF	chr14:19359966-19360185	K562	blood:	n/a	n/a
24	CTCF	chr14:19360330-19360389	Pancreas_OC	pancreas:	n/a	chr14:19360341-19360350
25	CTCF	chr14:19327137-19327152	GM20000	blood:	n/a	n/a
26	CTCF	chr14:19359940-19360090	BJ	skin:	n/a	n/a
27	CTCF	chr14:19270796-19270860	Spleen_OC	spleen:	n/a	n/a
28	CTCF	chr14:19359923-19360138	LNCaP	prostate:	n/a	n/a
29	CTCF	chr14:19360050-19360132	GM20000	blood:	n/a	n/a
30	CTCF	chr14:19250505-19250618	LNCaP	prostate:	n/a	n/a
31	CTCF	chr14:19359960-19360110	SK-N-SH_RA	brain:	n/a	n/a
32	CTCF	chr14:19207062-19207079	LNCaP	prostate:	n/a	n/a
33	CTCF	chr14:19360225-19360443	A549	lung:	n/a	chr14:19360288-19360301 chr14:19360341-19360350
34	CTCF	chr14:19360012-19360088	Pancreas_OC	pancreas:	n/a	n/a
35	CTCF	chr14:19250213-19250276	LNCaP	prostate:	n/a	n/a
36	CTCF	chr14:19173703-19173734	GM10266	blood:	n/a	n/a
37	CTCF	chr14:19369828-19369863	GM13976	blood:	n/a	n/a
38	CTCF	chr14:19363353-19363445	Pancreas_OC	pancreas:	n/a	n/a
39	CTCF	chr14:19357542-19357582	GM20000	blood:	n/a	n/a
40	CTCF	chr14:19359870-19360188	A549	lung:	n/a	n/a
41	CTCF	chr14:19216419-19216440	GM13976	blood:	n/a	n/a
42	CTCF	chr14:19359953-19360138	LNCaP	prostate:	n/a	n/a
43	CTCF	chr14:19336911-19336927	GM20000	blood:	n/a	n/a
44	CTCF	chr14:19358133-19358166	GM10266	blood:	n/a	n/a
45	CTCF	chr14:19341080-19341134	GM20000	blood:	n/a	n/a
46	CTCF	chr14:19356156-19356185	GM10266	blood:	n/a	n/a
47	CTCF	chr14:19360324-19360479	GM20000	blood:	n/a	chr14:19360341-19360350
48	CTCF	chr14:19309043-19309075	Medullo	brain:	n/a	n/a
49	CTCF	chr14:19218172-19218258	GM13976	blood:	n/a	n/a
50	CTCF	chr14:19243961-19244033	LNCaP	prostate:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:19360878-19360928	GM12878	blood:	n/a
2	chr14:19360467-19360517	HRE	kidney:	n/a
3	chr14:19360878-19360928	ECC-1	luminal epithelium:	n/a
4	chr14:19360878-19360928	BJ	skin:	n/a
5	chr14:19360467-19360517	CMK	blood:	n/a
6	chr14:19360467-19360517	HNPCEpiC	eye:	n/a
7	chr14:19360467-19360517	BJ	skin:	n/a
8	chr14:19360467-19360517	SK-N-SH_RA	brain:	n/a
9	chr14:19360878-19360928	HNPCEpiC	eye:	n/a
10	chr14:19360878-19360928	HPAEpiC	pulmonary alveolar:	n/a
11	chr14:19360878-19360928	HIPEpiC	eye:	n/a
12	chr14:19360878-19360928	HRE	kidney:	n/a
13	chr14:19360467-19360517	MCF10A-Er-Src	breast:	n/a
14	chr14:19360467-19360517	NT2-D1	testis:	n/a
15	chr14:19360467-19360517	PrEC	prostate:	n/a
16	chr14:19360878-19360928	T-47D	breast:	n/a
17	chr14:19360467-19360517	ECC-1	luminal epithelium:	n/a
18	chr14:19360467-19360517	HEK293	kidney:	embryo
19	chr14:19360467-19360517	NH-A	brain:	n/a
20	chr14:19360878-19360928	HAEpiC	amniotic membrane:	n/a
21	chr14:19360878-19360928	NHBE	bronchial:	n/a
22	chr14:19360878-19360928	HCPEpiC	choroid plexus:	n/a
23	chr14:19360878-19360928	SK-N-SH	brain:	n/a
24	chr14:19360467-19360517	HL-60	blood:	n/a
25	chr14:19360878-19360928	HRPEpiC	eye:	n/a
26	chr14:19360467-19360517	SAEC	small airway:	n/a
27	chr14:19360878-19360928	HUVEC	blood vessel:	n/a
28	chr14:19360467-19360517	GM06990	blood:	n/a
29	chr14:19360467-19360517	SKMC	muscle:	n/a
30	chr14:19360878-19360928	PrEC	prostate:	n/a
31	chr14:19360878-19360928	NB4	blood:	n/a
32	chr14:19360878-19360928	MCF10A-Er-Src	breast:	n/a
33	chr14:19360878-19360928	CMK	blood:	n/a
34	chr14:19360467-19360517	PANC-1	pancreas:	n/a
35	chr14:19360467-19360517	ProgFib	skin:	n/a
36	chr14:19360467-19360517	LNCaP	prostate:	n/a
37	chr14:19360467-19360517	A549	lung:	n/a
38	chr14:19360878-19360928	AG04449	skin:	fetal
39	chr14:19360878-19360928	AG09319	gingival:	n/a
40	chr14:19360878-19360928	HRCEpiC	kidney:	n/a
41	chr14:19360878-19360928	AoSMC	blood vessel:	n/a
42	chr14:19360878-19360928	HCM	heart:	n/a
43	chr14:19360467-19360517	HCPEpiC	choroid plexus:	n/a
44	chr14:19360467-19360517	GM12891	blood:	n/a
45	chr14:19360467-19360517	ovcar-3	ovarian:	n/a
46	chr14:19360467-19360517	AG04450	lung:	fetal
47	chr14:19360467-19360517	NHDF-neo	bronchial:	n/a
48	chr14:19360467-19360517	Jurkat	blood:	n/a
49	chr14:19360878-19360928	BE2_C	brain:	n/a
50	chr14:19360878-19360928	NT2-D1	testis:	n/a

No data

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OR11H12.1-2	chr14:19340299-19340388	NONHSAT035436
2	lnc-OR11H12.1-2	chr14:19341921-19341993	NONHSAT035436
3	lnc-OR11H12.1-2	chr14:19345173-19345267	NONHSAT035436
4	lnc-POTEM-10	chr14:19332154-19332599	ENSG00000257959.1
5	lnc-POTEM-10	chr14:19372736-19372787	ENSG00000257959.1
6	lnc-OR11H12.1-2	chr14:19339405-19339552	NONHSAT035436
7	lnc-OR11H12.1-5	chr14:19195252-19195750	NONHSAT035433

No data

Variant related genes	Relation type
ENSG00000257825	TF binding region
ENSG00000257959	TF binding region
ENSG00000238442	TF binding region
ENSG00000257171	TF binding region
ENSG00000258367	TF binding region
ENSG00000257356	TF binding region
ENSG00000257721	TF binding region
OR11H12	TF binding region
ENSG00000257825	CpG island
ENSG00000257959	CpG island
ENSG00000238442	CpG island
ENSG00000257171	CpG island
ENSG00000258367	CpG island
ENSG00000257356	CpG island
ENSG00000257721	CpG island
OR11H12	CpG island

Extended variants
information (count: 362 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:362 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs376827105	chr14:19193101-19193102	Inactive region	TF binding region	2 gene(s)	Overlapped CNVs	n/a
2	rs369352247	chr14:19193131-19193132	Inactive region	TF binding region	2 gene(s)	Overlapped CNVs	n/a
3	rs373158522	chr14:19193153-19193154	Inactive region	TF binding region	2 gene(s)	Overlapped CNVs	n/a
4	rs377446751	chr14:19193206-19193207	Inactive region	TF binding region	2 gene(s)	Overlapped CNVs	n/a
5	rs370015465	chr14:19193215-19193216	Inactive region	TF binding region	2 gene(s)	Overlapped CNVs	n/a
6	rs535477544	chr14:19193260-19193261	Inactive region	TF binding region	2 gene(s)	Overlapped CNVs	n/a
7	rs554079647	chr14:19193315-19193316	Inactive region	TF binding region	2 gene(s)	Overlapped CNVs	n/a
8	rs566049355	chr14:19193416-19193417	Inactive region	TF binding region	2 gene(s)	Overlapped CNVs	n/a
9	rs539718097	chr14:19193452-19193453	Inactive region	TF binding region	2 gene(s)	Overlapped CNVs	n/a
10	rs557933974	chr14:19193537-19193538	Inactive region	TF binding region	2 gene(s)	Overlapped CNVs	n/a
11	rs576521635	chr14:19193551-19193552	Inactive region	TF binding region	2 gene(s)	Overlapped CNVs	n/a
12	rs533155196	chr14:19194402-19194403	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs551687969	chr14:19194430-19194431	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs367766488	chr14:19194442-19194443	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs563675171	chr14:19194994-19194995	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs367912872	chr14:19195017-19195018	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs531115998	chr14:19195032-19195033	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs372136499	chr14:19195049-19195050	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
19	rs549613752	chr14:19195264-19195265	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs567900341	chr14:19195296-19195297	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs79292222	chr14:19195326-19195327	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs77761376	chr14:19195327-19195328	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs375763763	chr14:19195510-19195511	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs369027091	chr14:19195686-19195687	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs186047812	chr14:19248917-19248918	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs549290335	chr14:19248932-19248933	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
27	rs543682135	chr14:19248941-19248942	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
28	rs534412454	chr14:19249002-19249003	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs552612135	chr14:19249036-19249037	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
30	rs111890099	chr14:19249056-19249057	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs112081783	chr14:19250550-19250551	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
32	rs77411081	chr14:19250576-19250577	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs562540983	chr14:19250598-19250599	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs567775393	chr14:19250615-19250616	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
35	rs371858539	chr14:19265218-19265219	Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs560693687	chr14:19265228-19265229	Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs376547842	chr14:19265259-19265260	Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs113635895	chr14:19265263-19265264	Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs137932929	chr14:19265264-19265265	Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs143400563	chr14:19265280-19265281	Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs531986430	chr14:19265343-19265344	Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs550912892	chr14:19265354-19265355	Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs147130977	chr14:19265362-19265363	Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs529943665	chr14:19265364-19265365	Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs116591955	chr14:19265372-19265373	Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs567695494	chr14:19265381-19265382	Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs189299854	chr14:19265385-19265386	Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs181338505	chr14:19265404-19265405	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs553162595	chr14:19265421-19265422	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs571630312	chr14:19265428-19265429	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Cancer	20164920	CNVD
Esophageal cancer	21851588	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Cone-rod dystrophy	18421352	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Non-small cell lung cancer	21044232	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Breast cancer	17899364	CNVD
Colorectal cancer	16774939	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Schizophrenia	20967226	CNVD
Autism	19287141	CNVD
early-passage human iPS cells	21368824	CNVD
Breast cancer	20932292	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	17142309	CNVD
Breast cancer	21364760	CNVD
Rett syndrome	21593744	CNVD
Breast cancer	20369283	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Incontinentia Pigmenti	22033527	CNVD
Myelofibrosis	22110671	CNVD
Alzheimer''s disease	21482944	CNVD
Mental retardation	19951919	CNVD
Neuroblastoma	21899760	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Heart disease	21282601	CNVD
Esophageal cancer	20955586	CNVD
Neurodevelopmental disorder	22521361	CNVD
Lung cancer	16773561	CNVD
Multiple myeloma	16616336	CNVD
Cancer	17440070	CNVD
Breast cancer	16272173	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Epilepsy	20736978	CNVD
Mental retardation	20736978	CNVD
severe speech impairment	20736978	CNVD
speech impairment	20736978	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	22522925	CNVD
Oligozoospermia	20877625	CNVD
Sertoli-cell only syndrome	20877625	CNVD
Ependymoma	20639864	CNVD
Williams Syndrome	20824207	CNVD
Developmental delay	21147756	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Pancreatic cancer	17952125	CNVD
Bladder cancer	21909424	CNVD
Gastrointestinal stromal cancer	20818650	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:19265200-19265800	Active TSS	Fetal Heart	heart
2	chr14:19265400-19268400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr14:19265800-19266200	ZNF genes & repeats	Fetal Heart	heart
4	chr14:19265800-19268200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
5	chr14:19267800-19268200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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