Variant report

Variant	nsv569507
Chromosome Location	chr15:54730223-54787358
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:54777517..54778098-chr15:55488919..55489423,2	MCF-7	breast:
2	chr15:54627743..54629757-chr15:54746231..54748915,2	K562	blood:

Variant related genes	Relation type
ENSG00000137876	chromatin interactions

Extended variants
information (count: 1365 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:1365 , 50 per page) page: 1 2 3 4 5 6 7 ... 28

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs201818991	chr15:54734600-54734601	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs570487783	chr15:54734633-54734634	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs527736830	chr15:54734634-54734635	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs370121756	chr15:54734684-54734685	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs553624551	chr15:54734698-54734699	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs144508678	chr15:54734713-54734714	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs137919238	chr15:54734744-54734745	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs527709848	chr15:54744420-54744421	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs541496989	chr15:54744446-54744447	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs2899541	chr15:54744466-54744467	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs4301968	chr15:54744492-54744493	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs72736513	chr15:54744506-54744507	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs181409413	chr15:54744513-54744514	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs569131436	chr15:54744524-54744525	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs2414314	chr15:54744525-54744526	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs551416790	chr15:54744526-54744527	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs185944740	chr15:54744592-54744593	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs533569298	chr15:54744596-54744597	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs553805016	chr15:54744643-54744644	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs567028555	chr15:54744646-54744647	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs111520567	chr15:54744667-54744668	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs556332125	chr15:54744689-54744690	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs576274389	chr15:54744697-54744698	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs149518422	chr15:54744716-54744717	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs144038045	chr15:54744744-54744745	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs115154433	chr15:54744775-54744776	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs140445387	chr15:54744776-54744777	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs12440914	chr15:54744832-54744833	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs533651512	chr15:54744845-54744846	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs144317577	chr15:54744852-54744853	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs543973306	chr15:54744861-54744862	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs191709145	chr15:54744862-54744863	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs147785869	chr15:54744868-54744869	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs551619662	chr15:54744873-54744874	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs371372458	chr15:54744877-54744878	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs183222573	chr15:54744913-54744914	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs79724458	chr15:54744925-54744926	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs527811665	chr15:54744935-54744936	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs547090209	chr15:54744958-54744959	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs373872391	chr15:54744959-54744960	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs566966221	chr15:54744963-54744964	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs79332266	chr15:54744989-54744990	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs549064813	chr15:54745004-54745005	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs549491543	chr15:54745019-54745020	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs142492526	chr15:54745026-54745027	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs538873249	chr15:54745040-54745041	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs8024645	chr15:54745049-54745050	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs556472298	chr15:54745084-54745085	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs572653442	chr15:54745098-54745099	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs151334865	chr15:54745107-54745108	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17053054	CNVD
Breast cancer	22032731	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Hirschsprung''s Disease	21712996	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Acute monocytic leukemia	16498392	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Urothelial carcinoma	21177765	CNVD
Pancreatic cancer	17952125	CNVD
Renal cell carcinoma	21215367	CNVD

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54734600-54734800	Enhancers	Esophagus	oesophagus
2	chr15:54744400-54745000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:54744800-54745600	ZNF genes & repeats	Aorta	Aorta
4	chr15:54745600-54752200	Weak transcription	Aorta	Aorta
5	chr15:54752200-54752600	ZNF genes & repeats	Aorta	Aorta
6	chr15:54752400-54752600	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:54754000-54754200	ZNF genes & repeats	Fetal Lung	lung
8	chr15:54754200-54757200	Weak transcription	Fetal Lung	lung
9	chr15:54754600-54755200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:54754800-54755200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:54767600-54767800	Weak transcription	Aorta	Aorta
12	chr15:54769200-54777600	Weak transcription	Aorta	Aorta
13	chr15:54773400-54774200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:54774200-54775000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr15:54774400-54774800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:54774400-54775000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr15:54774600-54775000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr15:54774600-54775000	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr15:54775200-54794000	Weak transcription	Fetal Lung	lung
20	chr15:54777600-54777800	ZNF genes & repeats	Aorta	Aorta
21	chr15:54777800-54810400	Weak transcription	Aorta	Aorta
22	chr15:54784800-54785000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:54784800-54785200	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr15:54785000-54785600	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr15:54785200-54785400	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr15:54785200-54791000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr15:54785400-54786800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr15:54785600-54791200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr15:54786800-54787200	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr15:54786800-54787200	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr15:54786800-54787400	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr15:54787000-54787400	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr15:54787000-54791200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr15:54787200-54790800	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr15:54787200-54791000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links