Variant report

Variant	nsv569917
Chromosome Location	chr15:72284647-72329906
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:72322441..72324750-chr15:72328303..72329981,2	MCF-7	breast:
2	chr15:72292779..72294305-chr15:72296375..72298824,2	K562	blood:
3	chr15:72282427..72284925-chr15:72286751..72289211,2	K562	blood:
4	chr15:72328208..72329058-chr5:83308083..83308842,2	MCF-7	breast:
5	chr15:72324783..72327632-chr15:72328181..72330697,2	MCF-7	breast:
6	chr15:72297045..72298608-chr15:72298736..72301156,2	MCF-7	breast:
7	chr15:72318371..72321046-chr15:72324463..72327168,2	K562	blood:
8	chr15:72274005..72275804-chr15:72283955..72286549,2	MCF-7	breast:
9	chr15:72296226..72298848-chr15:72307966..72310000,2	K562	blood:
10	chr15:72287720..72291695-chr15:72296118..72297805,3	MCF-7	breast:
11	chr15:72282427..72284925-chr15:72286751..72289211,2	K562	blood:
12	chr15:72322441..72324750-chr15:72328303..72329981,2	MCF-7	breast:
13	chr15:72324783..72327632-chr15:72328181..72330697,2	MCF-7	breast:
14	chr15:72296226..72298848-chr15:72307966..72310000,2	K562	blood:
15	chr15:72318371..72321046-chr15:72324463..72327168,2	K562	blood:
16	chr15:72297045..72298608-chr15:72298736..72301156,2	MCF-7	breast:
17	chr15:72287720..72291695-chr15:72296118..72297805,3	MCF-7	breast:
18	chr15:72284044..72286331-chr15:72302500..72304124,2	K562	blood:
19	chr15:72304128..72305861-chr15:72523185..72525011,2	MCF-7	breast:
20	chr15:72284044..72286331-chr15:72302500..72304124,2	K562	blood:
21	chr15:72292779..72294305-chr15:72296375..72298824,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SENP8-1	chr15:72328856-72329030	ENSG00000261632.1
2	lnc-SENP8-1	chr15:72291354-72291421	ENSG00000261632.1
3	lnc-SENP8-1	chr15:72286034-72286129	ENSG00000261632.1

No data

Variant related genes	Relation type
ENSG00000067225	chromatin interactions

Extended variants
information (count: 1608 )
Associated
traits (count: 77 )

Variant overlapped rSNPs/rCNVs (count:1608 , 50 per page) page: 1 2 3 4 5 6 7 ... 33

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12592364	chr15:72284647-72284648	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs79584905	chr15:72284693-72284694	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs149190106	chr15:72284757-72284758	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs185368103	chr15:72284851-72284852	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs532003315	chr15:72284869-72284870	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs547058455	chr15:72284887-72284888	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs8039378	chr15:72284927-72284928	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs529851546	chr15:72284934-72284935	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs146645487	chr15:72285035-72285036	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs569925704	chr15:72285049-72285050	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs189802272	chr15:72285189-72285190	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs552581720	chr15:72285276-72285277	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs573732086	chr15:72285393-72285394	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs139102162	chr15:72285416-72285417	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs535031457	chr15:72285417-72285418	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs371298684	chr15:72285425-72285426	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs553388414	chr15:72285476-72285477	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs75958521	chr15:72285485-72285486	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs79704332	chr15:72285486-72285487	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs374236174	chr15:72285513-72285514	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs536042898	chr15:72285523-72285524	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs143004978	chr15:72285534-72285535	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs575512504	chr15:72285562-72285563	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs181903605	chr15:72285563-72285564	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs186426769	chr15:72285594-72285595	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs377760343	chr15:72285622-72285623	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs530751598	chr15:72285623-72285624	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs535963724	chr15:72285635-72285636	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs540673408	chr15:72285664-72285665	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs559397554	chr15:72285679-72285680	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs529793370	chr15:72285689-72285690	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs556167004	chr15:72285712-72285713	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs548351517	chr15:72285725-72285726	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs563365038	chr15:72285799-72285800	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs530746978	chr15:72285827-72285828	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs552465570	chr15:72285895-72285896	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs147029471	chr15:72285910-72285911	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs190881616	chr15:72285936-72285937	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs148277272	chr15:72285952-72285953	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs568530011	chr15:72286031-72286032	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs535607373	chr15:72286039-72286040	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs180951164	chr15:72286097-72286098	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs575933910	chr15:72286128-72286129	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs141380634	chr15:72286154-72286155	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs185898637	chr15:72286178-72286179	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs557986664	chr15:72286184-72286185	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs545316390	chr15:72286226-72286227	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs111913730	chr15:72286246-72286247	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs372815107	chr15:72286295-72286296	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs77045979	chr15:72286297-72286298	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:77)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Prostate cancer	16573809	CNVD
Autism	17322880	CNVD
Autism	20678247	CNVD
Retinoblastoma	21504564	CNVD
Matthew-Wood syndrome	21085971	CNVD
Myelofibrosis	22110671	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Urothelial cell carcinoma	18451213	CNVD
phobic disorder	16773131	CNVD
Autism	21480499	CNVD
Disorders of sex development	22290220	CNVD
Mental retardation	19951919	CNVD
Mental retardation	16773131	CNVD
T-cell lymphomas	19863542	CNVD
15q24 microdeletion syndrome	22180641	CNVD
15q24 microdeletion syndrome	19921647	CNVD
Disease	22216833	CNVD
Mental retardation	17360722	CNVD
15q24 microdeletion syndrome	22216833	CNVD
15q24 microdeletion syndrome	22283845	CNVD
Developmental delay	17932688	CNVD
craniofacial dysmorphism	17932688	CNVD
digital and genital abnormalities	17932688	CNVD
Mental retardation	17621639	CNVD
Autism	20808228	CNVD
Breast cancer	21364760	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Urothelial carcinoma	21177765	CNVD
Epilepsy	22083797	CNVD
Renal cell carcinoma	21215367	CNVD

Chromatin state (count:618 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72225000-72305200	Weak transcription	Psoas Muscle	Psoas
2	chr15:72225000-72305600	Weak transcription	Gastric	stomach
3	chr15:72226800-72343600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr15:72227800-72326200	Weak transcription	Fetal Brain Male	brain
5	chr15:72230600-72291000	Weak transcription	Primary B cells from cord blood	blood
6	chr15:72244400-72298600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr15:72246600-72293600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr15:72250200-72291200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr15:72260400-72291200	Weak transcription	Brain Anterior Caudate	brain
10	chr15:72260400-72301000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:72261000-72326200	Weak transcription	NH-A	brain
12	chr15:72262400-72293000	Weak transcription	Small Intestine	intestine
13	chr15:72262600-72291000	Weak transcription	NHDF-Ad	bronchial
14	chr15:72263600-72300400	Weak transcription	NHLF	lung
15	chr15:72264000-72301800	Weak transcription	Colonic Mucosa	Colon
16	chr15:72266000-72299000	Weak transcription	Fetal Kidney	kidney
17	chr15:72266400-72323000	Weak transcription	Lung	lung
18	chr15:72266600-72315000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr15:72266800-72300400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr15:72267600-72298400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr15:72268400-72302000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr15:72268600-72298400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr15:72268600-72299800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr15:72268600-72308200	Weak transcription	Right Ventricle	heart
25	chr15:72268600-72313200	Weak transcription	HMEC	breast
26	chr15:72268800-72291200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr15:72268800-72291800	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr15:72270200-72294400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr15:72270600-72297600	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr15:72272000-72323200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr15:72277200-72325800	Weak transcription	Fetal Heart	heart
32	chr15:72278400-72284800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr15:72280200-72289400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr15:72280200-72338800	Weak transcription	Hela-S3	cervix
35	chr15:72280400-72303800	Weak transcription	GM12878-XiMat	blood
36	chr15:72280800-72292000	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr15:72280800-72318200	Weak transcription	Pancreas	Pancrea
38	chr15:72281200-72286200	Strong transcription	Fetal Stomach	stomach
39	chr15:72281400-72299000	Weak transcription	Dnd41	blood
40	chr15:72281600-72284800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr15:72282000-72297600	Weak transcription	HSMMtube	muscle
42	chr15:72282000-72301600	Weak transcription	A549	lung
43	chr15:72282000-72311200	Weak transcription	Brain Cingulate Gyrus	brain
44	chr15:72282000-72341800	Weak transcription	Brain Angular Gyrus	brain
45	chr15:72282200-72299000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr15:72282200-72314200	Weak transcription	NHEK	skin
47	chr15:72282200-72337800	Weak transcription	Esophagus	oesophagus
48	chr15:72282200-72338800	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr15:72282400-72291200	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr15:72282400-72291200	Weak transcription	Colon Smooth Muscle	Colon

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