Variant report

Variant	nsv570170
Chromosome Location	chr15:78010746-78012618
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78009070..78011036-chr15:78012914..78014777,2	K562	blood:
2	chr15:78006781..78008736-chr15:78010587..78012816,2	K562	blood:
3	chr15:78006143..78008281-chr15:78009901..78012087,2	K562	blood:
4	chr15:73923669..73926089-chr15:78010481..78013463,2	K562	blood:

Variant related genes	Relation type
ENSG00000169783	chromatin interactions
ENSG00000156642	chromatin interactions

Extended variants
information (count: 104 )
Associated
traits (count: 51 )

Variant overlapped rSNPs/rCNVs (count:104 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs569038122	chr15:78010749-78010750	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs539301438	chr15:78010750-78010751	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs58395512	chr15:78010762-78010763	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs138028415	chr15:78010779-78010780	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs149548753	chr15:78010791-78010792	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs113610224	chr15:78010794-78010795	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs533825500	chr15:78010808-78010809	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs183205850	chr15:78010828-78010829	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs575119129	chr15:78010847-78010848	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs542034623	chr15:78010854-78010855	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs557656210	chr15:78010862-78010863	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs188169524	chr15:78010870-78010871	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs575814050	chr15:78010928-78010929	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs75050093	chr15:78010932-78010933	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs564090237	chr15:78010933-78010934	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs11072666	chr15:78010949-78010950	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs55803038	chr15:78011002-78011003	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs561831904	chr15:78011016-78011017	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs375035454	chr15:78011048-78011049	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs77547129	chr15:78011056-78011057	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs550475591	chr15:78011074-78011075	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs562817777	chr15:78011101-78011102	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs11854808	chr15:78011104-78011105	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs80302639	chr15:78011109-78011110	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs372608959	chr15:78011186-78011187	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs533762187	chr15:78011187-78011188	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs549125650	chr15:78011216-78011217	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs74829633	chr15:78011223-78011224	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs142727716	chr15:78011229-78011230	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs190909633	chr15:78011252-78011253	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs146054098	chr15:78011261-78011262	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs182171307	chr15:78011395-78011396	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs187916300	chr15:78011418-78011419	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs572934686	chr15:78011441-78011442	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs540212755	chr15:78011505-78011506	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs561313391	chr15:78011508-78011509	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs201555127	chr15:78011509-78011510	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs35125858	chr15:78011545-78011546	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs561869110	chr15:78011594-78011595	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs574016845	chr15:78011622-78011623	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs544405446	chr15:78011636-78011637	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs550136335	chr15:78011726-78011727	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs544410341	chr15:78011755-78011756	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs116653267	chr15:78011757-78011758	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs533151615	chr15:78011762-78011763	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs140096281	chr15:78011785-78011786	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs560462193	chr15:78011798-78011799	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs527303797	chr15:78011799-78011800	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs548962247	chr15:78011818-78011819	Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs143685392	chr15:78011823-78011824	Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:51)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	17322880	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Myelofibrosis	22110671	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Autism	21480499	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78004600-78012000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr15:78006400-78013000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:78007000-78016600	Weak transcription	Brain Angular Gyrus	brain
4	chr15:78009200-78012000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
5	chr15:78009400-78011800	Enhancers	Fetal Brain Male	brain
6	chr15:78009400-78015200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr15:78009800-78012200	Weak transcription	Brain Germinal Matrix	brain
8	chr15:78010000-78015200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:78010000-78015800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:78010200-78012200	Weak transcription	Fetal Brain Female	brain
11	chr15:78011800-78012000	Bivalent Enhancer	Fetal Brain Male	brain
12	chr15:78012000-78012200	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
13	chr15:78012000-78012200	Bivalent Enhancer	Fetal Kidney	kidney
14	chr15:78012000-78012400	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr15:78012000-78015800	Weak transcription	Fetal Heart	heart
16	chr15:78012200-78012400	Bivalent Enhancer	Fetal Brain Male	brain
17	chr15:78012200-78013000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
18	chr15:78012200-78013000	Enhancers	Fetal Brain Female	brain
19	chr15:78012200-78013400	Enhancers	Brain Germinal Matrix	brain
20	chr15:78012400-78012600	Enhancers	Spleen	Spleen
21	chr15:78012400-78012800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr15:78012400-78013400	Enhancers	Fetal Brain Male	brain
23	chr15:78012400-78016000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr15:78012600-78013200	Weak transcription	Spleen	Spleen
25	chr15:78012600-78013600	Enhancers	Fetal Muscle Trunk	muscle
26	chr15:78012600-78013600	Enhancers	Fetal Muscle Leg	muscle

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