Variant report

Variant	nsv570499
Chromosome Location	chr15:92675751-92677444
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:70 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs535180576	chr15:92675790-92675791	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs6496894	chr15:92675846-92675847	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs201161277	chr15:92675849-92675850	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs397829800	chr15:92675862-92675863	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs572166477	chr15:92675866-92675867	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs145209668	chr15:92675876-92675877	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs188464741	chr15:92675957-92675958	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs577513237	chr15:92675994-92675995	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs181311429	chr15:92676075-92676076	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs563327953	chr15:92676077-92676078	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs185535964	chr15:92676090-92676091	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs148712965	chr15:92676109-92676110	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs114595641	chr15:92676136-92676137	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs191468939	chr15:92676159-92676160	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs528680262	chr15:92676238-92676239	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs181932627	chr15:92676267-92676268	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs572008253	chr15:92676268-92676269	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs576872456	chr15:92676311-92676312	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs549828753	chr15:92676315-92676316	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs2283460	chr15:92676320-92676321	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs187009972	chr15:92676324-92676325	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs548816591	chr15:92676426-92676427	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs4777704	chr15:92676435-92676436	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs78795020	chr15:92676442-92676443	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs6496895	chr15:92676443-92676444	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs577550715	chr15:92676469-92676470	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs536969890	chr15:92676492-92676493	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs542841474	chr15:92676506-92676507	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs556801085	chr15:92676544-92676545	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs573960233	chr15:92676548-92676549	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs532147278	chr15:92676552-92676553	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs192465262	chr15:92676592-92676593	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs560995566	chr15:92676646-92676647	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs151227796	chr15:92676664-92676665	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs573275145	chr15:92676671-92676672	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs545650277	chr15:92676698-92676699	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs565455455	chr15:92676757-92676758	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs182281181	chr15:92676768-92676769	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs551314075	chr15:92676800-92676801	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs140370408	chr15:92676828-92676829	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs528887177	chr15:92676853-92676854	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs548961115	chr15:92676854-92676855	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs186895945	chr15:92676869-92676870	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs115048735	chr15:92676870-92676871	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs145464015	chr15:92676896-92676897	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs571123395	chr15:92676903-92676904	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs536809391	chr15:92676923-92676924	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs556839775	chr15:92676936-92676937	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs549818663	chr15:92676978-92676979	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs190174153	chr15:92677018-92677019	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Epilepsy	19486360	CNVD
Acute myeloid leukemia	17237825	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Ovarian cancer	21720365	CNVD
Developmental delay	21147756	CNVD
Hepatocellular carcinoma	16750200	CNVD
Central neurocytomas	17123091	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92643800-92676000	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr15:92645000-92679800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr15:92645200-92705600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr15:92648200-92692600	Weak transcription	NHLF	lung
5	chr15:92649200-92710800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr15:92657000-92690200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:92660600-92678600	Weak transcription	Thymus	Thymus
8	chr15:92661000-92703600	Weak transcription	Small Intestine	intestine
9	chr15:92663000-92677200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr15:92663400-92677600	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr15:92663400-92679200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr15:92663400-92679400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr15:92663600-92676200	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr15:92664000-92707000	Weak transcription	Liver	Liver
15	chr15:92664000-92712000	Weak transcription	Psoas Muscle	Psoas
16	chr15:92665200-92689000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr15:92665800-92676600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr15:92665800-92682400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr15:92665800-92686000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:92666000-92685600	Weak transcription	Fetal Muscle Leg	muscle
21	chr15:92666000-92704200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr15:92667200-92679200	Strong transcription	Lung	lung
23	chr15:92668200-92678400	Weak transcription	Fetal Heart	heart
24	chr15:92668200-92690200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:92668600-92690800	Weak transcription	Brain Angular Gyrus	brain
26	chr15:92669000-92676200	Strong transcription	Ovary	ovary
27	chr15:92669200-92677200	Weak transcription	Fetal Thymus	thymus
28	chr15:92669200-92677400	Strong transcription	Adipose Nuclei	Adipose
29	chr15:92669600-92703000	Weak transcription	Brain Anterior Caudate	brain
30	chr15:92670400-92677400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr15:92670600-92676000	Weak transcription	Duodenum Mucosa	Duodenum
32	chr15:92671200-92678400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr15:92671600-92708000	Weak transcription	Gastric	stomach
34	chr15:92671800-92707800	Weak transcription	Colonic Mucosa	Colon
35	chr15:92671800-92709200	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr15:92672000-92704200	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr15:92672200-92685400	Weak transcription	Brain Hippocampus Middle	brain
38	chr15:92672200-92695600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr15:92672200-92703200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr15:92672400-92689600	Weak transcription	Fetal Stomach	stomach
41	chr15:92672600-92677200	Weak transcription	Brain Substantia Nigra	brain
42	chr15:92672600-92678200	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr15:92672600-92690200	Weak transcription	Spleen	Spleen
44	chr15:92672600-92691200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr15:92672800-92678400	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr15:92672800-92687000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr15:92672800-92687200	Weak transcription	Primary hematopoietic stem cells	blood
48	chr15:92673400-92692600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr15:92673800-92678200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr15:92673800-92678400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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