Variant report

Variant	nsv570728
Chromosome Location	chr15:99973369-99986764
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:253)
CpG islands
(count:1037)
Chromatin interactive
region (count:28)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:253 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BHLHE40	chr15:99973687-99973691	GM12878	blood:	n/a	n/a
2	BRCA1	chr15:99975665-99975680	Hela-S3	cervix:	n/a	n/a
3	CEBPB	chr15:99982646-99983055	IMR90	lung:	n/a	n/a
4	CEBPB	chr15:99982704-99983088	Hela-S3	cervix:	n/a	n/a
5	CHD2	chr15:99975690-99975908	Hela-S3	cervix:	n/a	n/a
6	CHD2	chr15:99973825-99973857	Hela-S3	cervix:	n/a	n/a
7	CHD2	chr15:99973694-99973933	GM12878	blood:	n/a	n/a
8	CHD2	chr15:99982693-99983140	Hela-S3	cervix:	n/a	n/a
9	CTCF	chr15:99973674-99973785	Spleen_OC	spleen:	n/a	n/a
10	CTCF	chr15:99973280-99973430	GM12871	blood:	n/a	n/a
11	CTCF	chr15:99975720-99975870	MCF-7	breast:	n/a	n/a
12	CTCF	chr15:99975639-99975709	MCF-7	breast:	n/a	n/a
13	CTCF	chr15:99973300-99973450	HEK293	kidney:	n/a	n/a
14	CTCF	chr15:99973240-99973390	HPAF	blood vessel:	n/a	n/a
15	CTCF	chr15:99973280-99973430	HMEC	breast:	n/a	n/a
16	CTCF	chr15:99973300-99973450	GM12870	blood:	n/a	n/a
17	CTCF	chr15:99975630-99975763	Hela-S3	cervix:	n/a	n/a
18	CTCF	chr15:99975620-99975770	HMEC	breast:	n/a	n/a
19	CTCF	chr15:99973320-99973470	HEK293	kidney:	n/a	n/a
20	CTCF	chr15:99975600-99975750	Caco-2	colon:	n/a	n/a
21	CTCF	chr15:99975666-99975752	Pancreas_OC	pancreas:	n/a	n/a
22	CTCF	chr15:99978320-99978470	HCPEpiC	choroid plexus:	n/a	n/a
23	CTCF	chr15:99975660-99975810	HMEC	breast:	n/a	n/a
24	CTCF	chr15:99975440-99975590	GM06990	blood:	n/a	n/a
25	CTCF	chr15:99975600-99975750	SAEC	small airway:	n/a	n/a
26	CTCF	chr15:99975620-99975770	HEEpiC	esophagus:	n/a	n/a
27	CTCF	chr15:99975580-99975730	NHEK	skin:	n/a	n/a
28	CTCF	chr15:99973240-99973390	GM12864	blood:	n/a	n/a
29	CTCF	chr15:99973340-99973490	GM12865	blood:	n/a	n/a
30	CTCF	chr15:99973260-99973410	GM12866	blood:	n/a	n/a
31	CTCF	chr15:99973300-99973450	GM12873	blood:	n/a	n/a
32	CTCF	chr15:99975580-99975730	Hela-S3	cervix:	n/a	n/a
33	CTCF	chr15:99975585-99975742	MCF-7	breast:	n/a	n/a
34	CTCF	chr15:99978300-99978450	HBMEC	blood vessel:	n/a	n/a
35	CTCF	chr15:99973360-99973510	GM12873	blood:	n/a	n/a
36	CTCF	chr15:99975633-99975724	LNCaP	prostate:	n/a	n/a
37	CTCF	chr15:99975728-99975731	LNCaP	prostate:	n/a	n/a
38	CTCF	chr15:99973260-99973410	Hela-S3	cervix:	n/a	n/a
39	CTCF	chr15:99978397-99978442	H1-hESC	embryonic stem cell:	n/a	n/a
40	CTCF	chr15:99973300-99973450	HepG2	liver:	n/a	n/a
41	CTCF	chr15:99973300-99973450	SAEC	small airway:	n/a	n/a
42	CTCF	chr15:99973360-99973510	GM12872	blood:	n/a	n/a
43	CTCF	chr15:99973300-99973450	GM12867	blood:	n/a	n/a
44	CTCF	chr15:99981080-99981230	BE2_C	brain:	n/a	n/a
45	CTCF	chr15:99973940-99974090	GM12871	blood:	n/a	chr15:99974036-99974049
46	CTCF	chr15:99975560-99975710	SAEC	small airway:	n/a	n/a
47	CTCF	chr15:99973787-99973793	Spleen_OC	spleen:	n/a	n/a
48	CTCF	chr15:99975641-99975704	MCF-7	breast:	n/a	n/a
49	CTCF	chr15:99973400-99973550	GM12875	blood:	n/a	n/a
50	CTCF	chr15:99973798-99973839	Spleen_OC	spleen:	n/a	n/a

(count:1037 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:99979059-99979109	AG04449	skin:	fetal
2	chr15:99979584-99979634	HCM	heart:	n/a
3	chr15:99979346-99979396	PrEC	prostate:	n/a
4	chr15:99975334-99975384	HEK293	kidney:	embryo
5	chr15:99979389-99979439	ProgFib	skin:	n/a
6	chr15:99979389-99979439	AG04450	lung:	fetal
7	chr15:99979059-99979109	SAEC	small airway:	n/a
8	chr15:99982524-99982574	CMK	blood:	n/a
9	chr15:99974369-99974419	IMR90	lung:	fetal
10	chr15:99979013-99979063	PFSK-1	brain:	n/a
11	chr15:99975310-99975360	Hela-S3	cervix:	n/a
12	chr15:99979527-99979577	H1-hESC	embryonic stem cell:	embryo
13	chr15:99978986-99979036	HRPEpiC	eye:	n/a
14	chr15:99979527-99979577	HNPCEpiC	eye:	n/a
15	chr15:99979290-99979340	AG09309	skin:	n/a
16	chr15:99982524-99982574	SAEC	small airway:	n/a
17	chr15:99975470-99975520	HUVEC	blood vessel:	n/a
18	chr15:99974332-99974382	HRPEpiC	eye:	n/a
19	chr15:99975334-99975384	Hepatocyte	liver:	n/a
20	chr15:99974369-99974419	GM06990	blood:	n/a
21	chr15:99974332-99974382	A549	lung:	n/a
22	chr15:99975010-99975060	HMEC	breast:	n/a
23	chr15:99979527-99979577	NB4	blood:	n/a
24	chr15:99975010-99975060	AG09319	gingival:	n/a
25	chr15:99975310-99975360	HNPCEpiC	eye:	n/a
26	chr15:99979290-99979340	NHBE	bronchial:	n/a
27	chr15:99979346-99979396	GM12892	blood:	n/a
28	chr15:99978986-99979036	SK-N-SH_RA	brain:	n/a
29	chr15:99979013-99979063	BJ	skin:	n/a
30	chr15:99979389-99979439	PANC-1	pancreas:	n/a
31	chr15:99974332-99974382	PFSK-1	brain:	n/a
32	chr15:99974881-99974931	HCPEpiC	choroid plexus:	n/a
33	chr15:99979013-99979063	H1-hESC	embryonic stem cell:	embryo
34	chr15:99975010-99975060	Hepatocyte	liver:	n/a
35	chr15:99975470-99975520	SKMC	muscle:	n/a
36	chr15:99979013-99979063	HCF	heart:	n/a
37	chr15:99982524-99982574	Hepatocyte	liver:	n/a
38	chr15:99979290-99979340	AG09319	gingival:	n/a
39	chr15:99979389-99979439	SK-N-MC	brain:	n/a
40	chr15:99979290-99979340	HCT-116	colon:	n/a
41	chr15:99975470-99975520	PrEC	prostate:	n/a
42	chr15:99979527-99979577	RPTEC	kidney:	n/a
43	chr15:99975310-99975360	K562	blood:	n/a
44	chr15:99974332-99974382	HPAEpiC	pulmonary alveolar:	n/a
45	chr15:99979346-99979396	HNPCEpiC	eye:	n/a
46	chr15:99975010-99975060	HepG2	liver:	n/a
47	chr15:99979013-99979063	SK-N-SH_RA	brain:	n/a
48	chr15:99979013-99979063	AoSMC	blood vessel:	n/a
49	chr15:99975141-99975191	Hepatocyte	liver:	n/a
50	chr15:99975334-99975384	RPTEC	kidney:	n/a

(count:28 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:99962979..99964880-chr15:99972892..99975204,2	MCF-7	breast:
2	chr15:99979674..99981771-chr15:99994725..99997256,2	K562	blood:
3	chr15:99977572..99979807-chr15:99980072..99982815,2	K562	blood:
4	chr15:99972394..99975109-chr15:99977541..99980166,2	MCF-7	breast:
5	chr15:99975615..99977769-chr15:99978276..99979849,2	MCF-7	breast:
6	chr15:99975316..99977266-chr15:99981293..99982934,2	K562	blood:
7	chr15:99986076..99989977-chr15:99992374..99995201,3	K562	blood:
8	chr15:99972525..99976931-chr15:99986719..99991606,5	MCF-7	breast:
9	chr15:99963793..99965594-chr15:99976352..99978718,2	K562	blood:
10	chr15:99985824..99988050-chr15:99992595..99995524,2	MCF-7	breast:
11	chr15:99976307..99978594-chr15:100018036..100019822,2	MCF-7	breast:
12	chr15:99979583..99981872-chr15:99983556..99985309,2	MCF-7	breast:
13	chr15:99972394..99975109-chr15:99977541..99980166,2	MCF-7	breast:
14	chr15:99981180..99982961-chr15:99993073..99995315,2	MCF-7	breast:
15	chr15:99977572..99979807-chr15:99980072..99982815,2	K562	blood:
16	chr15:99974033..99977897-chr15:99978912..99982934,5	K562	blood:
17	chr15:99973224..99976448-chr15:99991050..99995157,5	MCF-7	breast:
18	chr15:99972525..99976931-chr15:99986719..99991606,5	MCF-7	breast:
19	chr15:99976374..99976897-chr15:100105314..100105862,2	Hela-S3	cervix:
20	chr15:99975316..99977266-chr15:99981293..99982934,2	K562	blood:
21	chr15:99981264..99984715-chr15:99985641..99987973,4	MCF-7	breast:
22	chr15:99971316..99975999-chr15:100104042..100107403,7	MCF-7	breast:
23	chr15:99979583..99981872-chr15:99983556..99985309,2	MCF-7	breast:
24	chr15:99974033..99977897-chr15:99978912..99982934,5	K562	blood:
25	chr15:99981781..99983657-chr15:100018041..100019744,2	MCF-7	breast:
26	chr15:99984466..99986504-chr15:100104174..100107057,2	K562	blood:
27	chr15:99975615..99977769-chr15:99978276..99979849,2	MCF-7	breast:
28	chr15:99981264..99984715-chr15:99985641..99987973,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000259341	TF binding region
ENSG00000259341	CpG island
ENSG00000068305	chromatin interactions

Extended variants
information (count: 636 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:636 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7167464	chr15:99973369-99973370	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs568406426	chr15:99973393-99973394	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs535831914	chr15:99973399-99973400	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs7169461	chr15:99973413-99973414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs569367113	chr15:99973436-99973437	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs372228574	chr15:99973441-99973442	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs115864870	chr15:99973450-99973451	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs577088433	chr15:99973479-99973480	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs7169660	chr15:99973529-99973530	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs146710947	chr15:99973547-99973548	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs367587047	chr15:99973548-99973549	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs112372917	chr15:99973567-99973568	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs190525312	chr15:99973574-99973575	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs115502053	chr15:99973615-99973616	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs80084402	chr15:99973632-99973633	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs137989443	chr15:99973637-99973638	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs149474121	chr15:99973642-99973643	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs564673548	chr15:99973658-99973659	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs551639829	chr15:99973683-99973684	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs570219769	chr15:99973694-99973695	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs537388608	chr15:99973710-99973711	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs181971010	chr15:99973727-99973728	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs143875849	chr15:99973741-99973742	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs73474854	chr15:99973758-99973759	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs117250292	chr15:99973759-99973760	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs148624678	chr15:99973763-99973764	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs574101623	chr15:99973769-99973770	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs569381070	chr15:99973773-99973774	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs539915486	chr15:99973789-99973790	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs115845688	chr15:99973805-99973806	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs76944942	chr15:99973843-99973844	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs534499609	chr15:99973862-99973863	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs62025393	chr15:99973879-99973880	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs376712033	chr15:99973881-99973882	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs553280207	chr15:99973930-99973931	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs574382138	chr15:99973965-99973966	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs74035733	chr15:99973993-99973994	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs556491342	chr15:99974004-99974005	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs575017435	chr15:99974015-99974016	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs545847258	chr15:99974022-99974023	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs555954730	chr15:99974032-99974033	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs201331847	chr15:99974067-99974068	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs371207779	chr15:99974080-99974081	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs540463895	chr15:99974106-99974107	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs562406770	chr15:99974127-99974128	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs529568896	chr15:99974191-99974192	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs553510071	chr15:99974200-99974201	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs562838000	chr15:99974222-99974223	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs146283806	chr15:99974225-99974226	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs533160987	chr15:99974248-99974249	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
Intellectual disability	22102821	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ovarian cancer	21720365	CNVD
Developmental delay	21147756	CNVD
Hepatocellular carcinoma	16750200	CNVD
Central neurocytomas	17123091	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Burkitt''s lymphoma	19759907	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17133270	CNVD
Myelofibrosis	22110671	CNVD
Mental retardation	20811773	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	21364760	CNVD
Breast cancer	20409316	CNVD
Emphysema	19352772	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17142309	CNVD
Schizophrenia	23813976	CNVD
Renal cell carcinoma	21215367	CNVD

Chromatin state (count:688 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:99966400-99973400	Weak transcription	Hela-S3	cervix
2	chr15:99966400-99973600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr15:99966800-99975400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:99970000-99976800	Enhancers	Primary B cells from peripheral blood	blood
5	chr15:99971200-99974600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:99971200-99978000	Enhancers	Spleen	Spleen
7	chr15:99971400-99978800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr15:99971400-99979200	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr15:99971600-99973400	Enhancers	Primary T cells fromperipheralblood	blood
10	chr15:99971600-99973400	Weak transcription	NHEK	skin
11	chr15:99971600-99973600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:99971600-99978800	Enhancers	Primary T cells from cord blood	blood
13	chr15:99971800-99974000	Enhancers	Thymus	Thymus
14	chr15:99971800-99976400	Enhancers	Primary B cells from cord blood	blood
15	chr15:99972000-99975200	Enhancers	Esophagus	oesophagus
16	chr15:99972000-99976000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr15:99972000-99976600	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr15:99972200-99974400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr15:99972200-99976200	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr15:99972200-99978600	Enhancers	Fetal Thymus	thymus
21	chr15:99972400-99974200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr15:99972400-99974400	Enhancers	Right Ventricle	heart
23	chr15:99972400-99975800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr15:99972400-99977400	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr15:99972600-99974200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr15:99972600-99974200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr15:99972600-99974400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
28	chr15:99972600-99974400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
29	chr15:99972600-99975200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr15:99972600-99975200	Enhancers	HMEC	breast
31	chr15:99972600-99975600	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr15:99972600-99976400	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr15:99972600-99976600	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr15:99972600-99977400	Enhancers	Placenta Amnion	Placenta Amnion
35	chr15:99972600-99979000	Enhancers	Left Ventricle	heart
36	chr15:99972800-99974000	Enhancers	Colonic Mucosa	Colon
37	chr15:99972800-99975000	Enhancers	GM12878-XiMat	blood
38	chr15:99972800-99976400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr15:99972800-99977800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr15:99972800-99978800	Enhancers	Lung	lung
41	chr15:99972800-99979000	Enhancers	Adipose Nuclei	Adipose
42	chr15:99973000-99973400	Bivalent Enhancer	HepG2	liver
43	chr15:99973000-99974000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr15:99973000-99974000	Enhancers	Fetal Stomach	stomach
45	chr15:99973000-99974200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr15:99973000-99974600	Bivalent Enhancer	Fetal Muscle Leg	muscle
47	chr15:99973000-99975200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr15:99973200-99973400	Enhancers	Rectal Smooth Muscle	rectum
49	chr15:99973200-99973600	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr15:99973200-99973800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links