Variant report

Variant	nsv572215
Chromosome Location	chr16:33321969-33768172
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3574)
CpG islands
(count:2014)
Chromatin interactive
region (count:25)
LncRNA
region (count:11)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3574 , 50 per page) page: 1 2 3 4 5 6 7 ... 72

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr16:33502987-33503033	HepG2	liver:	n/a	n/a
2	ARID3A	chr16:33577202-33577382	HepG2	liver:	n/a	n/a
3	ATF1	chr16:33544959-33544976	K562	blood:	n/a	n/a
4	ATF1	chr16:33535249-33535260	K562	blood:	n/a	n/a
5	ATF1	chr16:33446622-33446661	K562	blood:	n/a	n/a
6	ATF3	chr16:33619018-33619453	K562	blood:	n/a	n/a
7	ATF3	chr16:33569376-33569681	K562	blood:	n/a	n/a
8	ATF3	chr16:33569464-33569595	GM12878	blood:	n/a	n/a
9	ATF3	chr16:33764110-33764276	K562	blood:	n/a	n/a
10	BATF	chr16:33564248-33564454	GM12878	blood:	n/a	n/a
11	BATF	chr16:33521180-33521433	GM12878	blood:	n/a	n/a
12	BATF	chr16:33331077-33331251	GM12878	blood:	n/a	n/a
13	BATF	chr16:33716043-33716353	GM12878	blood:	n/a	n/a
14	BATF	chr16:33673521-33673717	GM12878	blood:	n/a	n/a
15	BATF	chr16:33524710-33524926	GM12878	blood:	n/a	chr16:33524743-33524752
16	BATF	chr16:33521242-33521484	GM12878	blood:	n/a	n/a
17	BATF	chr16:33458798-33459290	GM12878	blood:	n/a	n/a
18	BATF	chr16:33446462-33446750	GM12878	blood:	n/a	n/a
19	BATF	chr16:33524553-33524907	GM12878	blood:	n/a	chr16:33524743-33524752
20	BATF	chr16:33585762-33586003	GM12878	blood:	n/a	n/a
21	BATF	chr16:33328184-33328483	GM12878	blood:	n/a	chr16:33328300-33328311
22	BATF	chr16:33365611-33366045	GM12878	blood:	n/a	n/a
23	BATF	chr16:33445748-33446186	GM12878	blood:	n/a	chr16:33445964-33445975 chr16:33445982-33445990
24	BATF	chr16:33647061-33647311	GM12878	blood:	n/a	n/a
25	BATF	chr16:33365688-33366003	GM12878	blood:	n/a	n/a
26	BATF	chr16:33563865-33564062	GM12878	blood:	n/a	n/a
27	BATF	chr16:33589201-33589438	GM12878	blood:	n/a	n/a
28	BATF	chr16:33431461-33431755	GM12878	blood:	n/a	chr16:33431606-33431617
29	BATF	chr16:33448828-33449178	GM12878	blood:	n/a	chr16:33449053-33449063
30	BATF	chr16:33448799-33449188	GM12878	blood:	n/a	chr16:33449053-33449063
31	BATF	chr16:33722423-33722618	GM12878	blood:	n/a	n/a
32	BATF	chr16:33517619-33517865	GM12878	blood:	n/a	n/a
33	BATF	chr16:33369625-33369914	GM12878	blood:	n/a	n/a
34	BATF	chr16:33763898-33764246	GM12878	blood:	n/a	n/a
35	BATF	chr16:33517629-33517889	GM12878	blood:	n/a	n/a
36	BATF	chr16:33358267-33358522	GM12878	blood:	n/a	n/a
37	BATF	chr16:33431441-33431744	GM12878	blood:	n/a	chr16:33431606-33431617
38	BATF	chr16:33445892-33446115	GM12878	blood:	n/a	chr16:33445964-33445975 chr16:33445982-33445990
39	BATF	chr16:33364185-33364651	GM12878	blood:	n/a	chr16:33364440-33364451
40	BATF	chr16:33370078-33370545	GM12878	blood:	n/a	n/a
41	BCL11A	chr16:33722347-33722700	GM12878	blood:	n/a	n/a
42	BCL11A	chr16:33322753-33323015	GM12878	blood:	n/a	n/a
43	BCL11A	chr16:33647047-33647229	GM12878	blood:	n/a	n/a
44	BCL11A	chr16:33358261-33358521	GM12878	blood:	n/a	n/a
45	BCL11A	chr16:33329020-33329200	GM12878	blood:	n/a	n/a
46	BCL11A	chr16:33563810-33564006	GM12878	blood:	n/a	n/a
47	BCL11A	chr16:33582517-33582748	GM12878	blood:	n/a	n/a
48	BCL11A	chr16:33585333-33585647	GM12878	blood:	n/a	n/a
49	BCL11A	chr16:33448833-33449216	GM12878	blood:	n/a	chr16:33449056-33449065 chr16:33449055-33449064
50	BCL11A	chr16:33359781-33360055	GM12878	blood:	n/a	n/a

(count:2014 , 50 per page) page: 1 2 3 4 5 6 7 ... 41

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr16:33481620-33481670	H1-hESC	embryonic stem cell:	embryo
2	chr16:33481620-33481670	H1-hESC	embryonic stem cell:	embryo
3	chr16:33357426-33357476	GM12878	blood:	n/a
4	chr16:33355024-33355074	NH-A	brain:	n/a
5	chr16:33358227-33358277	NHBE	bronchial:	n/a
6	chr16:33573857-33573907	HEEpiC	esophagus:	n/a
7	chr16:33730720-33730770	U87	brain:	n/a
8	chr16:33374131-33374181	GM06990	blood:	n/a
9	chr16:33627536-33627586	AG04450	lung:	fetal
10	chr16:33374131-33374181	HCT-116	colon:	n/a
11	chr16:33374161-33374211	HMEC	breast:	n/a
12	chr16:33483299-33483349	AG09319	gingival:	n/a
13	chr16:33573272-33573322	GM12878	blood:	n/a
14	chr16:33358227-33358277	NB4	blood:	n/a
15	chr16:33573272-33573322	NH-A	brain:	n/a
16	chr16:33374028-33374078	GM06990	blood:	n/a
17	chr16:33574151-33574201	GM06990	blood:	n/a
18	chr16:33483591-33483641	PANC-1	pancreas:	n/a
19	chr16:33573857-33573907	NB4	blood:	n/a
20	chr16:33730720-33730770	SK-N-SH	brain:	n/a
21	chr16:33570021-33570071	GM06990	blood:	n/a
22	chr16:33358227-33358277	AoSMC	blood vessel:	n/a
23	chr16:33487438-33487488	SKMC	muscle:	n/a
24	chr16:33730720-33730770	SK-N-MC	brain:	n/a
25	chr16:33358227-33358277	MCF-7	breast:	n/a
26	chr16:33510089-33510139	GM19239	blood:	n/a
27	chr16:33483462-33483512	A549	lung:	n/a
28	chr16:33570115-33570165	NHBE	bronchial:	n/a
29	chr16:33355024-33355074	SKMC	muscle:	n/a
30	chr16:33355024-33355074	HNPCEpiC	eye:	n/a
31	chr16:33481620-33481670	AG09309	skin:	n/a
32	chr16:33573857-33573907	NH-A	brain:	n/a
33	chr16:33604228-33604278	RPTEC	kidney:	n/a
34	chr16:33357151-33357201	PrEC	prostate:	n/a
35	chr16:33374028-33374078	IMR90	lung:	fetal
36	chr16:33570021-33570071	MCF-7	breast:	n/a
37	chr16:33374131-33374181	NB4	blood:	n/a
38	chr16:33509433-33509483	AG04450	lung:	fetal
39	chr16:33509523-33509573	GM12892	blood:	n/a
40	chr16:33374161-33374211	AG10803	skin:	n/a
41	chr16:33570021-33570071	PANC-1	pancreas:	n/a
42	chr16:33730539-33730589	NT2-D1	testis:	n/a
43	chr16:33570021-33570071	BJ	skin:	n/a
44	chr16:33573857-33573907	GM12891	blood:	n/a
45	chr16:33627536-33627586	HIPEpiC	eye:	n/a
46	chr16:33627536-33627586	H1-hESC	embryonic stem cell:	embryo
47	chr16:33483299-33483349	Hepatocyte	liver:	n/a
48	chr16:33627215-33627265	PrEC	prostate:	n/a
49	chr16:33573857-33573907	HIPEpiC	eye:	n/a
50	chr16:33374028-33374078	Caco-2	colon:	n/a

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:32993835..32994354-chr16:33619041..33619624,2	MCF-7	breast:
2	chr1:121484857..121485377-chr16:33618718..33619247,2	MCF-7	breast:
3	chr16:33535568..33538409-chr16:33539107..33541473,2	K562	blood:
4	chr16:33618887..33619679-chr16:33739842..33740784,2	MCF-7	breast:
5	chr14:107287133..107287781-chr16:33618600..33619120,3	MCF-7	breast:
6	chr16:33618975..33619481-chr6:120699536..120700074,2	MCF-7	breast:
7	chr16:33618559..33619759-chr16:33646461..33647717,8	MCF-7	breast:
8	chr16:32876653..32877208-chr16:33618895..33619446,2	MCF-7	breast:
9	chr16:33599590..33601128-chr16:33607194..33610110,2	K562	blood:
10	chr16:33357445..33357965-chrX:123093937..123094556,2	MCF-7	breast:
11	chr16:33374454..33377112-chr16:33390580..33392185,2	MCF-7	breast:
12	chr16:32951293..32951850-chr16:33618657..33619267,2	MCF-7	breast:
13	chr16:33501621..33504383-chr16:33506713..33508666,2	K562	blood:
14	chr16:33501621..33504383-chr16:33506713..33508666,2	K562	blood:
15	chr12:123886567..123888097-chr16:33420189..33423186,2	K562	blood:
16	chr16:33599590..33601128-chr16:33607194..33610110,2	K562	blood:
17	chr16:33618687..33619546-chr21:22589708..22590404,2	MCF-7	breast:
18	chr13:30046484..30047067-chr16:33618956..33619795,2	MCF-7	breast:
19	chr16:33618887..33619679-chr16:33739842..33740784,2	MCF-7	breast:
20	chr16:33618869..33619686-chr16:33955996..33956882,3	MCF-7	breast:
21	chr16:33618632..33619607-chr16:33646788..33647301,2	MCF-7	breast:
22	chr16:33362493..33363428-chr3:73095698..73096500,2	MCF-7	breast:
23	chr16:33535568..33538409-chr16:33539107..33541473,2	K562	blood:
24	chr16:33618632..33619607-chr16:33646788..33647301,2	MCF-7	breast:
25	chr16:33374454..33377112-chr16:33390580..33392185,2	MCF-7	breast:

(count:11 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC140658.1-3	chr16:33750745-33751015	NONHSAT142117
2	lnc-AC136428.1.1-1	chr16:33660402-33660589	ENSG00000260312.1
3	lnc-AC140658.1-5	chr16:33768122-33768427	NONHSAT142119
4	lnc-RP11-1277H1.1.1-2	chr16:33340193-33341795	XLOC_011696
5	lnc-RP11-1277H1.1.1-2	chr16:33342943-33343609	XLOC_011696
6	lnc-AC136428.1.1-1	chr16:33661251-33661331	ENSG00000260312.1
7	lnc-AC136428.1.1-1	chr16:33661001-33661077	ENSG00000260312.1
8	lnc-AC136428.1.1-10	chr16:33677506-33677808	NONHSAT142113
9	lnc-AC136428.1.1-10	chr16:33677891-33677935	NONHSAT142113
10	lnc-AC136428.1.1-4	chr16:33336283-33336630	ENSG00000260626.1
11	lnc-AC136428.1.1-4	chr16:33337232-33337443	ENSG00000260626.1

No data

Variant related genes	Relation type
ENSG00000261607	TF binding region
ENSG00000260525	TF binding region
IGHV3OR16-16	TF binding region
ENSG00000261153	TF binding region
ENSG00000259680	TF binding region
ENSG00000260312	TF binding region
IGHV3OR16-12	TF binding region
ENSG00000259882	TF binding region
ENSG00000263277	TF binding region
ENSG00000260308	TF binding region
ENSG00000261466	TF binding region
ENSG00000261405	TF binding region
IGHV3OR16-11	TF binding region
IGHV3OR16-13	TF binding region
ENSG00000260626	TF binding region
IGHV3OR16-7	TF binding region
ENPP7P13	TF binding region
ENSG00000261200	TF binding region
ENSG00000271691	TF binding region
ENSG00000270924	TF binding region
ARHGAP23P1	TF binding region
BMS1P8	TF binding region
ENSG00000261607	CpG island
ENSG00000260525	CpG island
IGHV3OR16-16	CpG island
ENSG00000261153	CpG island
ENSG00000259680	CpG island
ENSG00000260312	CpG island
IGHV3OR16-12	CpG island
ENSG00000259882	CpG island
ENSG00000263277	CpG island
ENSG00000260308	CpG island
ENSG00000261466	CpG island
ENSG00000261405	CpG island
IGHV3OR16-11	CpG island
IGHV3OR16-13	CpG island
ENSG00000260626	CpG island
IGHV3OR16-7	CpG island
ENPP7P13	CpG island
ENSG00000261200	CpG island
ENSG00000271691	CpG island
ENSG00000270924	CpG island
ARHGAP23P1	CpG island
BMS1P8	CpG island
ENSG00000101972	chromatin interactions
ENSG00000259680	chromatin interactions
UHMK1	miRNA target sites

Extended variants
information (count: 10774 )
Associated
traits (count: 130 )

Variant overlapped rSNPs/rCNVs (count:10774 , 50 per page) page: 1 2 3 4 5 6 7 ... 216

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs79761511	chr16:33331207-33331208	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs529521221	chr16:33331293-33331294	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs541395169	chr16:33331432-33331433	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs559288898	chr16:33331446-33331447	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs62031044	chr16:33331449-33331450	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs551407266	chr16:33331465-33331466	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs569774403	chr16:33331528-33331529	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs530698829	chr16:33331675-33331676	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs370833048	chr16:33331698-33331699	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs371332962	chr16:33331810-33331811	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs549178983	chr16:33331817-33331818	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs567506119	chr16:33331822-33331823	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs534911617	chr16:33331831-33331832	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs4090680	chr16:33331836-33331837	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs552705386	chr16:33331846-33331847	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs553039789	chr16:33331862-33331863	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs368380971	chr16:33331876-33331877	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs566019150	chr16:33331919-33331920	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs539460109	chr16:33331931-33331932	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs557794350	chr16:33331941-33331942	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs576149427	chr16:33331974-33331975	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs543537795	chr16:33331989-33331990	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs372048323	chr16:33332005-33332006	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs369761922	chr16:33332030-33332031	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs111807364	chr16:33332067-33332068	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs201758129	chr16:33332073-33332074	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs555525041	chr16:33332084-33332085	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs367675304	chr16:33332087-33332088	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs574189768	chr16:33332096-33332097	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs541704666	chr16:33332098-33332099	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs371850223	chr16:33332125-33332126	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs559796050	chr16:33332186-33332187	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs375783375	chr16:33332237-33332238	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs532898758	chr16:33332239-33332240	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs369865196	chr16:33332247-33332248	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs544702754	chr16:33332273-33332274	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs563302900	chr16:33332299-33332300	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs530608213	chr16:33332301-33332302	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs111385814	chr16:33332317-33332318	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs372344973	chr16:33332335-33332336	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs375154399	chr16:33332355-33332356	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs549142260	chr16:33332401-33332402	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs369616649	chr16:33332443-33332444	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs528278672	chr16:33332462-33332463	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs546834164	chr16:33332493-33332494	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs571468524	chr16:33332497-33332498	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs539791686	chr16:33332502-33332503	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs557708316	chr16:33332544-33332545	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs569748751	chr16:33332549-33332550	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs537139032	chr16:33332552-33332553	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:130)

Disease	PMID	Source
Hodgkin''s lymphoma	20651079	CNVD
Metanephric adenoma	20802469	CNVD
Melanoma	18172304	CNVD
Breast cancer	16608533	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Autism	22566537	CNVD
Intellectual disability	22566537	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Ductal carcinoma	22052326	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	21858162	CNVD
Hepatocellular carcinoma	16750200	CNVD
Mental retardation	19951919	CNVD
Colorectal cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21990379	CNVD
Astrocytoma	22246337	CNVD
Myelofibrosis	22110671	CNVD
Epilepsy	22499536	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Austim spectrum disorder	21302340	CNVD
Autism	22513405	CNVD
Autism	22958593	CNVD
Autism	18184952	CNVD
Autism	19966786	CNVD
Autism	21394203	CNVD
Autism	21969575	CNVD
Autism	22241247	CNVD
Autism	20970697	CNVD
Autism	20942916	CNVD
Epilepsy	20970697	CNVD
Intellectual disability	22045946	CNVD
Mental retardation	19966786	CNVD
Developmental delay	20808231	CNVD
Obesity	20808231	CNVD
Autism	18923514	CNVD
Obesity	21881559	CNVD
Obesity	21956041	CNVD
Autism	20659124	CNVD
Mental retardation	21062444	CNVD
Schizophrenia	20587603	CNVD
Schizophrenia	21285140	CNVD
Schizophrenia	22885689	CNVD
Schizophrenia	20553308	CNVD
Schizophrenia	20970697	CNVD
Schizophrenia	20433910	CNVD
Schizophrenia	22241247	CNVD
Autism	19242545	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Intracranial ependymoma	16609018	CNVD
Schizophrenia	21399695	CNVD
Autism	21956041	CNVD
Disorders of sex development	21048976	CNVD
Autism	22067053	CNVD
Autism	18156158	CNVD
Mental retardation	20152051	CNVD
Autism	19218893	CNVD
Autism	21289514	CNVD
Schizophrenia	19855392	CNVD
neurodevelopmental Syndrome	20503337	CNVD
Benign familial neonatal-infantile seizures	21060786	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Cancer	21183584	CNVD
Low-grade fibromyxoid sarcoma	21536545	CNVD
Breast cancer	21045282	CNVD
Neuroblastoma	20406844	CNVD
Autism	19050728	CNVD
Epilepsy	20923578	CNVD
Psychiatric disorder	19050728	CNVD
Schizophrenia	19348701	CNVD
Attention deficit hyperactivity disorder	19097825	CNVD
Autism	20964600	CNVD
Schizophrenia	19955444	CNVD
Schizophrenia	18990708	CNVD
Schizophrenia	19571808	CNVD
Breast cancer	20409316	CNVD
Severe combined immunodeficiency	19097825	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Autism	18522746	CNVD
Sezary syndrome	18413736	CNVD
Wilms tumour	21544195	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Cancer	20164920	CNVD
Autism	19287141	CNVD
Schizophrenia	20967226	CNVD
Breast cancer	17142309	CNVD
Cancer	20164919	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Non-syndromic sensorineural hearing loss	22297974	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21509527	CNVD
early-passage human iPS cells	21368824	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Breast cancer	22522925	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD

Chromatin state (count:273 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:33331200-33332400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr16:33332400-33332800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr16:33347200-33348200	Enhancers	Left Ventricle	heart
4	chr16:33347200-33348800	Enhancers	Right Ventricle	heart
5	chr16:33347200-33349200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr16:33347200-33350600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr16:33347800-33348000	ZNF genes & repeats	Pancreas	Pancrea
8	chr16:33347800-33348200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr16:33348000-33348200	ZNF genes & repeats	Gastric	stomach
10	chr16:33348200-33349400	Weak transcription	Left Ventricle	heart
11	chr16:33348800-33350000	Weak transcription	Right Ventricle	heart
12	chr16:33349400-33350200	Enhancers	Left Ventricle	heart
13	chr16:33349400-33351600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr16:33350000-33350200	Enhancers	Right Ventricle	heart
15	chr16:33350000-33350600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr16:33351200-33352000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr16:33351600-33352000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr16:33351800-33352000	ZNF genes & repeats	Right Atrium	heart
19	chr16:33352000-33356200	Weak transcription	Right Atrium	heart
20	chr16:33356800-33357600	Enhancers	Placenta	Placenta
21	chr16:33357200-33357800	Active TSS	iPS-18 Cell Line	embryonic stem cell
22	chr16:33357600-33357800	Flanking Bivalent TSS/Enh	Placenta	Placenta
23	chr16:33365600-33369800	Weak transcription	Right Atrium	heart
24	chr16:33369600-33370400	Enhancers	Primary B cells from peripheral blood	blood
25	chr16:33370000-33371200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
26	chr16:33371200-33372400	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr16:33371200-33372800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
28	chr16:33371600-33372600	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr16:33373600-33373800	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr16:33373800-33374000	Enhancers	Placenta	Placenta
31	chr16:33373800-33374400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
32	chr16:33373800-33377000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
33	chr16:33374000-33374400	Bivalent Enhancer	Placenta	Placenta
34	chr16:33374600-33376600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr16:33375200-33375400	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr16:33375200-33375800	ZNF genes & repeats	Right Ventricle	heart
37	chr16:33375400-33375800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr16:33375400-33376000	Bivalent Enhancer	Placenta	Placenta
39	chr16:33375400-33377200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr16:33376000-33376800	Enhancers	Placenta	Placenta
41	chr16:33377600-33382200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr16:33378200-33382600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
43	chr16:33379400-33380400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr16:33379600-33380200	ZNF genes & repeats	Gastric	stomach
45	chr16:33379600-33380600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
46	chr16:33380000-33380400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
47	chr16:33381200-33383400	Enhancers	Placenta	Placenta
48	chr16:33382200-33382400	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr16:33383200-33383600	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr16:33383400-33388600	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links