Variant report

Variant	nsv572394
Chromosome Location	chr16:35154536-35185259
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 454 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:454 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs560339190	chr16:35161607-35161608	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs148259835	chr16:35161651-35161652	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs552849075	chr16:35161656-35161657	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs564583715	chr16:35161680-35161681	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs531733273	chr16:35161730-35161731	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs537771431	chr16:35161751-35161752	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs550244788	chr16:35161780-35161781	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs568456099	chr16:35161794-35161795	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs376430020	chr16:35161895-35161896	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs535982760	chr16:35161914-35161915	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs547884992	chr16:35161964-35161965	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs181896701	chr16:35162008-35162009	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs114133170	chr16:35162041-35162042	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs528203082	chr16:35162045-35162046	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs1074784	chr16:35162046-35162047	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs186926688	chr16:35162068-35162069	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs556308773	chr16:35162111-35162112	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs554976037	chr16:35162122-35162123	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs368804123	chr16:35162136-35162137	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs573276769	chr16:35162138-35162139	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs540746406	chr16:35162158-35162159	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs558987962	chr16:35162199-35162200	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs146338464	chr16:35164616-35164617	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs139082154	chr16:35164679-35164680	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs75802132	chr16:35164684-35164685	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs568857743	chr16:35164685-35164686	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs544090312	chr16:35164686-35164687	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs191422978	chr16:35164692-35164693	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs544510759	chr16:35164707-35164708	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs548282012	chr16:35164726-35164727	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs567871757	chr16:35164728-35164729	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs375225748	chr16:35164735-35164736	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs535177784	chr16:35164741-35164742	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs34523906	chr16:35164749-35164750	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs553391959	chr16:35164755-35164756	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs578228036	chr16:35164791-35164792	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs538955345	chr16:35164798-35164799	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs184455975	chr16:35164808-35164809	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs575212745	chr16:35164809-35164810	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs542735458	chr16:35164812-35164813	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs561005588	chr16:35164880-35164881	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs572954715	chr16:35164887-35164888	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs189753145	chr16:35164948-35164949	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs142273495	chr16:35164971-35164972	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs181403129	chr16:35164978-35164979	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs550870109	chr16:35164990-35164991	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs562487604	chr16:35165035-35165036	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs186154159	chr16:35165044-35165045	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs58061492	chr16:35165058-35165059	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs566528335	chr16:35165141-35165142	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Autism	22566537	CNVD
Intellectual disability	22566537	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Ductal carcinoma	22052326	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Benign familial neonatal-infantile seizures	21060786	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Cancer	21183584	CNVD
Disorders of sex development	21048976	CNVD
Low-grade fibromyxoid sarcoma	21536545	CNVD
Breast cancer	21045282	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164920	CNVD
Renal cell carcinoma	18194544	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	21339820	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:35161600-35162200	ZNF genes & repeats	Dnd41	blood
2	chr16:35164600-35171800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr16:35167600-35170000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chr16:35175400-35176200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links