Variant report

Variant	nsv572396
Chromosome Location	chr16:35162035-35232318
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3992 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:3992 , 50 per page) page: 1 2 3 4 5 6 7 ... 80

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs114133170	chr16:35162041-35162042	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs528203082	chr16:35162045-35162046	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs1074784	chr16:35162046-35162047	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs186926688	chr16:35162068-35162069	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs556308773	chr16:35162111-35162112	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs554976037	chr16:35162122-35162123	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs368804123	chr16:35162136-35162137	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs573276769	chr16:35162138-35162139	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs540746406	chr16:35162158-35162159	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs558987962	chr16:35162199-35162200	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs146338464	chr16:35164616-35164617	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs139082154	chr16:35164679-35164680	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs75802132	chr16:35164684-35164685	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs568857743	chr16:35164685-35164686	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs544090312	chr16:35164686-35164687	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs191422978	chr16:35164692-35164693	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs544510759	chr16:35164707-35164708	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs548282012	chr16:35164726-35164727	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs567871757	chr16:35164728-35164729	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs375225748	chr16:35164735-35164736	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs535177784	chr16:35164741-35164742	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs34523906	chr16:35164749-35164750	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs553391959	chr16:35164755-35164756	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs578228036	chr16:35164791-35164792	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs538955345	chr16:35164798-35164799	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs184455975	chr16:35164808-35164809	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs575212745	chr16:35164809-35164810	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs542735458	chr16:35164812-35164813	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs561005588	chr16:35164880-35164881	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs572954715	chr16:35164887-35164888	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs189753145	chr16:35164948-35164949	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs142273495	chr16:35164971-35164972	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs181403129	chr16:35164978-35164979	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs550870109	chr16:35164990-35164991	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs562487604	chr16:35165035-35165036	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs186154159	chr16:35165044-35165045	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs58061492	chr16:35165058-35165059	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs566528335	chr16:35165141-35165142	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs541590153	chr16:35165175-35165176	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs201362702	chr16:35165179-35165180	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs181485411	chr16:35165184-35165185	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs76517769	chr16:35165192-35165193	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs111277873	chr16:35165198-35165199	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs539347314	chr16:35165221-35165222	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs151191089	chr16:35165230-35165231	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs563697942	chr16:35165240-35165241	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs186536071	chr16:35165243-35165244	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs535572707	chr16:35165259-35165260	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs150168213	chr16:35165292-35165293	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs375601426	chr16:35165344-35165345	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Autism	22566537	CNVD
Intellectual disability	22566537	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Ductal carcinoma	22052326	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Benign familial neonatal-infantile seizures	21060786	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Cancer	21183584	CNVD
Disorders of sex development	21048976	CNVD
Low-grade fibromyxoid sarcoma	21536545	CNVD
Breast cancer	21045282	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164920	CNVD
Renal cell carcinoma	18194544	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	21339820	CNVD

Chromatin state (count:234 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:35161600-35162200	ZNF genes & repeats	Dnd41	blood
2	chr16:35164600-35171800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr16:35167600-35170000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chr16:35175400-35176200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr16:35194200-35194600	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr16:35197000-35197200	Enhancers	Hela-S3	cervix
7	chr16:35197000-35197200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
8	chr16:35197000-35197200	ZNF genes & repeats	NH-A	brain
9	chr16:35197200-35201400	Weak transcription	NH-A	brain
10	chr16:35200800-35208600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
11	chr16:35201200-35213200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
12	chr16:35201400-35201600	ZNF genes & repeats	NH-A	brain
13	chr16:35201600-35205800	Weak transcription	NH-A	brain
14	chr16:35203600-35205800	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr16:35205600-35208600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
16	chr16:35205600-35209200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
17	chr16:35205600-35221200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr16:35205800-35206000	Flanking Bivalent TSS/Enh	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr16:35205800-35206000	ZNF genes & repeats	Small Intestine	intestine
20	chr16:35205800-35206200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
21	chr16:35205800-35206200	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
22	chr16:35205800-35206200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr16:35205800-35206200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
24	chr16:35205800-35206200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr16:35205800-35206200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
26	chr16:35205800-35206200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
27	chr16:35205800-35206200	ZNF genes & repeats	Brain Substantia Nigra	brain
28	chr16:35205800-35206200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
29	chr16:35205800-35206200	ZNF genes & repeats	Fetal Lung	lung
30	chr16:35205800-35206200	ZNF genes & repeats	HUVEC	blood vessel
31	chr16:35205800-35206200	ZNF genes & repeats	NH-A	brain
32	chr16:35205800-35206400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
33	chr16:35205800-35212200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
34	chr16:35206000-35206200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr16:35206000-35206200	ZNF genes & repeats	HepG2	liver
36	chr16:35206200-35215800	Weak transcription	NH-A	brain
37	chr16:35207400-35208400	ZNF genes & repeats	Adipose Nuclei	Adipose
38	chr16:35208600-35210800	ZNF genes & repeats	Liver	Liver
39	chr16:35210400-35210600	ZNF genes & repeats	Brain Angular Gyrus	brain
40	chr16:35210800-35211600	Weak transcription	Liver	Liver
41	chr16:35211600-35213800	ZNF genes & repeats	Liver	Liver
42	chr16:35211600-35221200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
43	chr16:35213200-35213600	Active TSS	Aorta	Aorta
44	chr16:35213400-35213600	ZNF genes & repeats	Left Ventricle	heart
45	chr16:35213400-35215800	Weak transcription	Small Intestine	intestine
46	chr16:35213600-35215800	Weak transcription	Aorta	Aorta
47	chr16:35213600-35215800	Weak transcription	Left Ventricle	heart
48	chr16:35214000-35215600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr16:35214400-35216600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
50	chr16:35214400-35220600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

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