Variant report

Variant	nsv572464
Chromosome Location	chr16:46435905-46499280
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SHCBP1-4	chr16:46440726-46441360	ucscGeneNc_uc002eex_1
2	lnc-SHCBP1-4	chr16:46477853-46478542	ucscGeneNc_uc002eex_1

Extended variants
information (count: 5808 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:5808 , 50 per page) page: 1 2 3 4 5 6 7 ... 117

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs36090262	chr16:46435905-46435906	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs62020922	chr16:46435909-46435910	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs77233188	chr16:46435910-46435911	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs62020923	chr16:46435914-46435915	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs76095475	chr16:46435915-46435916	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs62020924	chr16:46435917-46435918	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs78367346	chr16:46435921-46435922	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs575349161	chr16:46435922-46435923	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs542601892	chr16:46435929-46435930	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs62020925	chr16:46435930-46435931	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs561227054	chr16:46435931-46435932	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs77079735	chr16:46435940-46435941	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs192818608	chr16:46435941-46435942	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs546599032	chr16:46435943-46435944	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs564847259	chr16:46435945-46435946	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs532262527	chr16:46435951-46435952	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs62020926	chr16:46435954-46435955	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs550656751	chr16:46435957-46435958	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs77365661	chr16:46435958-46435959	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs570160767	chr16:46435973-46435974	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs76578948	chr16:46435974-46435975	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs80093339	chr16:46435989-46435990	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs8043983	chr16:46435990-46435991	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs79658096	chr16:46435991-46435992	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs80283695	chr16:46435993-46435994	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs549455173	chr16:46435995-46435996	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs567923861	chr16:46435997-46435998	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs78893408	chr16:46435998-46435999	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs74218004	chr16:46435999-46436000	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs534955658	chr16:46436005-46436006	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs79955512	chr16:46436008-46436009	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs552221054	chr16:46436015-46436016	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs374894474	chr16:46436029-46436030	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs74388112	chr16:46436031-46436032	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs377694046	chr16:46436032-46436033	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs75989357	chr16:46436042-46436043	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs62020927	chr16:46436048-46436049	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs77918368	chr16:46436051-46436052	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs376192949	chr16:46436052-46436053	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs577573182	chr16:46436055-46436056	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs185250390	chr16:46436058-46436059	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs76380272	chr16:46436059-46436060	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs74961566	chr16:46436063-46436064	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs75752233	chr16:46436068-46436069	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs370174829	chr16:46436074-46436075	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs575389049	chr16:46436081-46436082	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs368576830	chr16:46436082-46436083	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs62020928	chr16:46436086-46436087	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs542791402	chr16:46436089-46436090	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs554596304	chr16:46436092-46436093	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164920	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Autism	19955444	CNVD
Schizophrenia	19955444	CNVD
Renal cell carcinoma	18765545	CNVD
Sudden cardiac death	19188705	CNVD
Multiple myeloma	16616336	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21364760	CNVD
Ewing''s sarcoma	17952124	CNVD
Myelofibrosis	22110671	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:244 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:46419800-46444400	ZNF genes & repeats	Primary T cells from cord blood	blood
2	chr16:46431200-46436000	ZNF genes & repeats	NH-A	brain
3	chr16:46431200-46444800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
4	chr16:46431200-46445000	ZNF genes & repeats	Dnd41	blood
5	chr16:46431200-46447000	ZNF genes & repeats	HMEC	breast
6	chr16:46431200-46456000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
7	chr16:46431200-46456200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr16:46431200-46456200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
9	chr16:46431200-46456400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
10	chr16:46431200-46456400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
11	chr16:46431200-46456400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
12	chr16:46431200-46456400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
13	chr16:46431200-46456400	ZNF genes & repeats	Liver	Liver
14	chr16:46431200-46456400	ZNF genes & repeats	HUVEC	blood vessel
15	chr16:46431200-46456600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr16:46431200-46456600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
17	chr16:46431200-46456600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
18	chr16:46434200-46456200	ZNF genes & repeats	Fetal Brain Male	brain
19	chr16:46434200-46456800	ZNF genes & repeats	Adipose Nuclei	Adipose
20	chr16:46434400-46436200	ZNF genes & repeats	Primary B cells from cord blood	blood
21	chr16:46434400-46438400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
22	chr16:46434400-46451800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
23	chr16:46434400-46452200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
24	chr16:46434600-46436000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr16:46434600-46436000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
26	chr16:46434600-46436000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
27	chr16:46434600-46436000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr16:46434600-46436000	ZNF genes & repeats	Colon Smooth Muscle	Colon
29	chr16:46434600-46436000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
30	chr16:46434600-46436200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
31	chr16:46434600-46436400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
32	chr16:46434600-46436400	ZNF genes & repeats	Brain Anterior Caudate	brain
33	chr16:46434600-46439800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
34	chr16:46434600-46440600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
35	chr16:46434600-46445400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
36	chr16:46434600-46456000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
37	chr16:46434600-46456200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
38	chr16:46434600-46456200	ZNF genes & repeats	Fetal Heart	heart
39	chr16:46434600-46456400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr16:46434600-46456400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
41	chr16:46434600-46456400	ZNF genes & repeats	Fetal Lung	lung
42	chr16:46434800-46436000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
43	chr16:46434800-46436000	ZNF genes & repeats	Brain Hippocampus Middle	brain
44	chr16:46434800-46436000	ZNF genes & repeats	Brain Substantia Nigra	brain
45	chr16:46434800-46436000	ZNF genes & repeats	Stomach Mucosa	stomach
46	chr16:46434800-46436200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr16:46434800-46436200	ZNF genes & repeats	Gastric	stomach
48	chr16:46434800-46436600	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
49	chr16:46434800-46456600	ZNF genes & repeats	HepG2	liver
50	chr16:46435000-46436200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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