Variant report

Variant	nsv572470
Chromosome Location	chr16:46436691-46499331
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SHCBP1-4	chr16:46477853-46478542	ucscGeneNc_uc002eex_1
2	lnc-SHCBP1-4	chr16:46440726-46441360	ucscGeneNc_uc002eex_1

Extended variants
information (count: 5626 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:5626 , 50 per page) page: 1 2 3 4 5 6 7 ... 113

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs28817402	chr16:46436691-46436692	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs377241713	chr16:46436696-46436697	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs370455384	chr16:46436697-46436698	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs199766803	chr16:46436700-46436701	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs565140289	chr16:46436717-46436718	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs62021401	chr16:46436721-46436722	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs577325184	chr16:46436724-46436725	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs544928360	chr16:46436727-46436728	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs563034805	chr16:46436732-46436733	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs530134176	chr16:46436737-46436738	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs548270723	chr16:46436745-46436746	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs62021402	chr16:46436746-46436747	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs113635339	chr16:46436756-46436757	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs62021403	chr16:46436768-46436769	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs62021404	chr16:46436773-46436774	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs62021405	chr16:46436775-46436776	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs374434899	chr16:46436777-46436778	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs527792919	chr16:46436794-46436795	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs552666198	chr16:46436797-46436798	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs570702056	chr16:46436806-46436807	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs537642566	chr16:46436817-46436818	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs79407409	chr16:46436826-46436827	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs36180020	chr16:46436831-46436832	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs200186369	chr16:46436842-46436843	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs9921940	chr16:46436844-46436845	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs568248987	chr16:46436846-46436847	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs76908620	chr16:46436855-46436856	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs535707224	chr16:46436856-46436857	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs77493109	chr16:46436858-46436859	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs79798339	chr16:46436866-46436867	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs553372833	chr16:46436869-46436870	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs77813533	chr16:46436888-46436889	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs78297721	chr16:46436889-46436890	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs367608717	chr16:46436892-46436893	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs565290438	chr16:46436893-46436894	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs539154752	chr16:46436894-46436895	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs183888491	chr16:46436895-46436896	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs577412127	chr16:46436902-46436903	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs187644619	chr16:46436904-46436905	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs76846098	chr16:46436914-46436915	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs75406998	chr16:46436915-46436916	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs74849685	chr16:46436922-46436923	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs190913545	chr16:46436930-46436931	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs575043323	chr16:46436942-46436943	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs75838258	chr16:46436945-46436946	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs111794357	chr16:46436946-46436947	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs78507239	chr16:46436950-46436951	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs79735337	chr16:46436952-46436953	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs76713379	chr16:46436955-46436956	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs542497474	chr16:46436957-46436958	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164920	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Autism	19955444	CNVD
Schizophrenia	19955444	CNVD
Renal cell carcinoma	18765545	CNVD
Sudden cardiac death	19188705	CNVD
Multiple myeloma	16616336	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21364760	CNVD
Ewing''s sarcoma	17952124	CNVD
Myelofibrosis	22110671	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:214 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:46419800-46444400	ZNF genes & repeats	Primary T cells from cord blood	blood
2	chr16:46431200-46444800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
3	chr16:46431200-46445000	ZNF genes & repeats	Dnd41	blood
4	chr16:46431200-46447000	ZNF genes & repeats	HMEC	breast
5	chr16:46431200-46456000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr16:46431200-46456200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr16:46431200-46456200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
8	chr16:46431200-46456400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
9	chr16:46431200-46456400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
10	chr16:46431200-46456400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
11	chr16:46431200-46456400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
12	chr16:46431200-46456400	ZNF genes & repeats	Liver	Liver
13	chr16:46431200-46456400	ZNF genes & repeats	HUVEC	blood vessel
14	chr16:46431200-46456600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr16:46431200-46456600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
16	chr16:46431200-46456600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
17	chr16:46434200-46456200	ZNF genes & repeats	Fetal Brain Male	brain
18	chr16:46434200-46456800	ZNF genes & repeats	Adipose Nuclei	Adipose
19	chr16:46434400-46438400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
20	chr16:46434400-46451800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
21	chr16:46434400-46452200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
22	chr16:46434600-46439800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
23	chr16:46434600-46440600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
24	chr16:46434600-46445400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
25	chr16:46434600-46456000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
26	chr16:46434600-46456200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
27	chr16:46434600-46456200	ZNF genes & repeats	Fetal Heart	heart
28	chr16:46434600-46456400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr16:46434600-46456400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
30	chr16:46434600-46456400	ZNF genes & repeats	Fetal Lung	lung
31	chr16:46434800-46456600	ZNF genes & repeats	HepG2	liver
32	chr16:46435000-46437200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr16:46435400-46438000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
34	chr16:46435400-46438000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr16:46435400-46444400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
36	chr16:46435400-46449200	ZNF genes & repeats	Fetal Kidney	kidney
37	chr16:46435400-46456000	ZNF genes & repeats	K562	blood
38	chr16:46436000-46437000	Weak transcription	Brain Substantia Nigra	brain
39	chr16:46436000-46437400	Weak transcription	Brain Hippocampus Middle	brain
40	chr16:46436000-46437400	Weak transcription	Colon Smooth Muscle	Colon
41	chr16:46436000-46437400	Weak transcription	Right Atrium	heart
42	chr16:46436000-46437400	Weak transcription	Stomach Mucosa	stomach
43	chr16:46436000-46437600	Weak transcription	Aorta	Aorta
44	chr16:46436600-46446400	ZNF genes & repeats	Brain Anterior Caudate	brain
45	chr16:46436800-46445600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
46	chr16:46437000-46446200	ZNF genes & repeats	Brain Substantia Nigra	brain
47	chr16:46437200-46439400	ZNF genes & repeats	Rectal Smooth Muscle	rectum
48	chr16:46437200-46439600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr16:46437200-46439800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
50	chr16:46437400-46437800	ZNF genes & repeats	Stomach Mucosa	stomach

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