Variant report

Variant	nsv572478
Chromosome Location	chr16:46438175-46500302
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SHCBP1-4	chr16:46440726-46441360	ucscGeneNc_uc002eex_1
2	lnc-SHCBP1-4	chr16:46477853-46478542	ucscGeneNc_uc002eex_1

Extended variants
information (count: 5448 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:5448 , 50 per page) page: 1 2 3 4 5 6 7 ... 109

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9938362	chr16:46438175-46438176	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs561120707	chr16:46438183-46438184	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs74901815	chr16:46438185-46438186	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs75884639	chr16:46438186-46438187	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs371937360	chr16:46438194-46438195	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs76370062	chr16:46438195-46438196	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs62022465	chr16:46438199-46438200	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs528764353	chr16:46438202-46438203	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs546851487	chr16:46438203-46438204	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs565321677	chr16:46438212-46438213	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs532400403	chr16:46438216-46438217	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs551081350	chr16:46438220-46438221	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs569237067	chr16:46438221-46438222	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs536710212	chr16:46438238-46438239	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs548426149	chr16:46438241-46438242	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs184833681	chr16:46438248-46438249	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs62022466	chr16:46438268-46438269	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs201291051	chr16:46438270-46438271	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs566620358	chr16:46438274-46438275	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs201872315	chr16:46438276-46438277	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs534086089	chr16:46438281-46438282	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs74341401	chr16:46438291-46438292	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs76226021	chr16:46438292-46438293	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs77076888	chr16:46438296-46438297	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs79150869	chr16:46438304-46438305	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs75284652	chr16:46438310-46438311	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs78005541	chr16:46438312-46438313	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs558562250	chr16:46438313-46438314	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs113820135	chr16:46438318-46438319	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs576817596	chr16:46438323-46438324	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs78126598	chr16:46438324-46438325	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs76723621	chr16:46438326-46438327	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs181724663	chr16:46438336-46438337	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs565777558	chr16:46438346-46438347	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs80351323	chr16:46438353-46438354	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs74716414	chr16:46438358-46438359	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs75001958	chr16:46438373-46438374	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs77375521	chr16:46438374-46438375	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs75712222	chr16:46438382-46438383	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs184441883	chr16:46438385-46438386	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs574218150	chr16:46438388-46438389	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs74666981	chr16:46438391-46438392	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs541480072	chr16:46438392-46438393	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs9938527	chr16:46438393-46438394	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs528215190	chr16:46438397-46438398	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs199692391	chr16:46438400-46438401	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs546292165	chr16:46438404-46438405	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs76910746	chr16:46438407-46438408	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs78958411	chr16:46438409-46438410	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs78296495	chr16:46438413-46438414	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164920	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Autism	19955444	CNVD
Schizophrenia	19955444	CNVD
Renal cell carcinoma	18765545	CNVD
Sudden cardiac death	19188705	CNVD
Multiple myeloma	16616336	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21364760	CNVD
Ewing''s sarcoma	17952124	CNVD
Myelofibrosis	22110671	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:215 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:46419800-46444400	ZNF genes & repeats	Primary T cells from cord blood	blood
2	chr16:46431200-46444800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
3	chr16:46431200-46445000	ZNF genes & repeats	Dnd41	blood
4	chr16:46431200-46447000	ZNF genes & repeats	HMEC	breast
5	chr16:46431200-46456000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr16:46431200-46456200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr16:46431200-46456200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
8	chr16:46431200-46456400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
9	chr16:46431200-46456400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
10	chr16:46431200-46456400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
11	chr16:46431200-46456400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
12	chr16:46431200-46456400	ZNF genes & repeats	Liver	Liver
13	chr16:46431200-46456400	ZNF genes & repeats	HUVEC	blood vessel
14	chr16:46431200-46456600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr16:46431200-46456600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
16	chr16:46431200-46456600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
17	chr16:46434200-46456200	ZNF genes & repeats	Fetal Brain Male	brain
18	chr16:46434200-46456800	ZNF genes & repeats	Adipose Nuclei	Adipose
19	chr16:46434400-46438400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
20	chr16:46434400-46451800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
21	chr16:46434400-46452200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
22	chr16:46434600-46439800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
23	chr16:46434600-46440600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
24	chr16:46434600-46445400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
25	chr16:46434600-46456000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
26	chr16:46434600-46456200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
27	chr16:46434600-46456200	ZNF genes & repeats	Fetal Heart	heart
28	chr16:46434600-46456400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr16:46434600-46456400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
30	chr16:46434600-46456400	ZNF genes & repeats	Fetal Lung	lung
31	chr16:46434800-46456600	ZNF genes & repeats	HepG2	liver
32	chr16:46435400-46444400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
33	chr16:46435400-46449200	ZNF genes & repeats	Fetal Kidney	kidney
34	chr16:46435400-46456000	ZNF genes & repeats	K562	blood
35	chr16:46436600-46446400	ZNF genes & repeats	Brain Anterior Caudate	brain
36	chr16:46436800-46445600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
37	chr16:46437000-46446200	ZNF genes & repeats	Brain Substantia Nigra	brain
38	chr16:46437200-46439400	ZNF genes & repeats	Rectal Smooth Muscle	rectum
39	chr16:46437200-46439600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr16:46437200-46439800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
41	chr16:46437400-46438200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
42	chr16:46437400-46438200	ZNF genes & repeats	Right Atrium	heart
43	chr16:46437400-46439200	ZNF genes & repeats	Gastric	stomach
44	chr16:46437400-46439600	ZNF genes & repeats	Colon Smooth Muscle	Colon
45	chr16:46437400-46440200	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
46	chr16:46437400-46444200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
47	chr16:46437400-46444400	ZNF genes & repeats	Brain Hippocampus Middle	brain
48	chr16:46437400-46444600	ZNF genes & repeats	Brain Angular Gyrus	brain
49	chr16:46437600-46439000	ZNF genes & repeats	Aorta	Aorta
50	chr16:46437600-46439400	ZNF genes & repeats	GM12878-XiMat	blood

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