Variant report

Variant	nsv572481
Chromosome Location	chr16:46441016-46500195
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SHCBP1-4	chr16:46440726-46441360	ucscGeneNc_uc002eex_1
2	lnc-SHCBP1-4	chr16:46477853-46478542	ucscGeneNc_uc002eex_1

Extended variants
information (count: 4783 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:4783 , 50 per page) page: 1 2 3 4 5 6 7 ... 96

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12921954	chr16:46441016-46441017	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs12921956	chr16:46441020-46441021	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs202179187	chr16:46441032-46441033	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs542267482	chr16:46441043-46441044	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs12925711	chr16:46441046-46441047	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs560127238	chr16:46441058-46441059	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs527460452	chr16:46441060-46441061	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs77465992	chr16:46441066-46441067	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs74852345	chr16:46441067-46441068	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs76313142	chr16:46441068-46441069	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs77740011	chr16:46441069-46441070	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs74877150	chr16:46441070-46441071	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs78997045	chr16:46441071-46441072	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs75171817	chr16:46441072-46441073	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs77988409	chr16:46441073-46441074	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs76181409	chr16:46441075-46441076	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
17	rs78765619	chr16:46441077-46441078	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
18	rs78672877	chr16:46441080-46441081	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
19	rs74585274	chr16:46441081-46441082	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
20	rs74446722	chr16:46441082-46441083	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
21	rs62019834	chr16:46441083-46441084	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs75896815	chr16:46441088-46441089	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
23	rs564422330	chr16:46441093-46441094	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
24	rs79964967	chr16:46441094-46441095	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs76080964	chr16:46441096-46441097	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
26	rs77804418	chr16:46441099-46441100	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs78590550	chr16:46441104-46441105	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs78795592	chr16:46441106-46441107	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs79649947	chr16:46441108-46441109	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs77756241	chr16:46441112-46441113	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs200177628	chr16:46441120-46441121	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs80050682	chr16:46441121-46441122	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs567680551	chr16:46441129-46441130	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
34	rs79976013	chr16:46441134-46441135	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs62028479	chr16:46441136-46441137	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs547468783	chr16:46441140-46441141	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs76100218	chr16:46441146-46441147	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
38	rs75326532	chr16:46441147-46441148	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs186149320	chr16:46441157-46441158	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
40	rs189006698	chr16:46441161-46441162	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs80166679	chr16:46441163-46441164	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs78832935	chr16:46441167-46441168	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs78730427	chr16:46441170-46441171	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs78628255	chr16:46441183-46441184	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs534385015	chr16:46441187-46441188	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs112438858	chr16:46441194-46441195	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
47	rs202028199	chr16:46441208-46441209	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs200491344	chr16:46441214-46441215	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
49	rs555914495	chr16:46441216-46441217	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
50	rs538493407	chr16:46441217-46441218	ZNF genes & repeats Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164920	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Autism	19955444	CNVD
Schizophrenia	19955444	CNVD
Renal cell carcinoma	18765545	CNVD
Sudden cardiac death	19188705	CNVD
Multiple myeloma	16616336	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21364760	CNVD
Ewing''s sarcoma	17952124	CNVD
Myelofibrosis	22110671	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:199 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:46419800-46444400	ZNF genes & repeats	Primary T cells from cord blood	blood
2	chr16:46431200-46444800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
3	chr16:46431200-46445000	ZNF genes & repeats	Dnd41	blood
4	chr16:46431200-46447000	ZNF genes & repeats	HMEC	breast
5	chr16:46431200-46456000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr16:46431200-46456200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr16:46431200-46456200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
8	chr16:46431200-46456400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
9	chr16:46431200-46456400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
10	chr16:46431200-46456400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
11	chr16:46431200-46456400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
12	chr16:46431200-46456400	ZNF genes & repeats	Liver	Liver
13	chr16:46431200-46456400	ZNF genes & repeats	HUVEC	blood vessel
14	chr16:46431200-46456600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr16:46431200-46456600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
16	chr16:46431200-46456600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
17	chr16:46434200-46456200	ZNF genes & repeats	Fetal Brain Male	brain
18	chr16:46434200-46456800	ZNF genes & repeats	Adipose Nuclei	Adipose
19	chr16:46434400-46451800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
20	chr16:46434400-46452200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
21	chr16:46434600-46445400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
22	chr16:46434600-46456000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
23	chr16:46434600-46456200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
24	chr16:46434600-46456200	ZNF genes & repeats	Fetal Heart	heart
25	chr16:46434600-46456400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr16:46434600-46456400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
27	chr16:46434600-46456400	ZNF genes & repeats	Fetal Lung	lung
28	chr16:46434800-46456600	ZNF genes & repeats	HepG2	liver
29	chr16:46435400-46444400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
30	chr16:46435400-46449200	ZNF genes & repeats	Fetal Kidney	kidney
31	chr16:46435400-46456000	ZNF genes & repeats	K562	blood
32	chr16:46436600-46446400	ZNF genes & repeats	Brain Anterior Caudate	brain
33	chr16:46436800-46445600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
34	chr16:46437000-46446200	ZNF genes & repeats	Brain Substantia Nigra	brain
35	chr16:46437400-46444200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
36	chr16:46437400-46444400	ZNF genes & repeats	Brain Hippocampus Middle	brain
37	chr16:46437400-46444600	ZNF genes & repeats	Brain Angular Gyrus	brain
38	chr16:46437600-46444400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
39	chr16:46437800-46452800	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
40	chr16:46438000-46443600	Weak transcription	NHDF-Ad	bronchial
41	chr16:46439800-46441800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr16:46440800-46442400	ZNF genes & repeats	NHLF	lung
43	chr16:46441800-46442400	ZNF genes & repeats	Colon Smooth Muscle	Colon
44	chr16:46442200-46442400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr16:46442400-46443600	Weak transcription	Colon Smooth Muscle	Colon
46	chr16:46442600-46444200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
47	chr16:46442600-46444200	ZNF genes & repeats	GM12878-XiMat	blood
48	chr16:46443200-46444400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
49	chr16:46443200-46444400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr16:46443200-46450400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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