Variant report

Variant	nsv572484
Chromosome Location	chr16:46442159-46500451
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SHCBP1-4	chr16:46477853-46478542	ucscGeneNc_uc002eex_1

Extended variants
information (count: 4565 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:4565 , 50 per page) page: 1 2 3 4 5 6 7 ... 92

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9936518	chr16:46442159-46442160	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs374731613	chr16:46442161-46442162	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs567480675	chr16:46442163-46442164	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs368801219	chr16:46442164-46442165	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs111688448	chr16:46442165-46442166	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs373462658	chr16:46442168-46442169	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs376360409	chr16:46442169-46442170	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs199518939	chr16:46442185-46442186	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs62020361	chr16:46442193-46442194	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs118198873	chr16:46442203-46442204	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs553106174	chr16:46442210-46442211	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs201038317	chr16:46442211-46442212	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs62020362	chr16:46442217-46442218	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs111409419	chr16:46442222-46442223	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs578002604	chr16:46442226-46442227	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs76880605	chr16:46442227-46442228	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs62020363	chr16:46442230-46442231	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs111977079	chr16:46442231-46442232	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs62637752	chr16:46442247-46442248	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs373581754	chr16:46442249-46442250	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs202002833	chr16:46442252-46442253	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs192011674	chr16:46442253-46442254	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs142583956	chr16:46442261-46442262	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs557036539	chr16:46442267-46442268	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs575311202	chr16:46442271-46442272	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs542775796	chr16:46442272-46442273	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs554355052	chr16:46442275-46442276	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs200980548	chr16:46442283-46442284	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs201347517	chr16:46442289-46442290	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs375027546	chr16:46442290-46442291	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs62020364	chr16:46442292-46442293	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs200019255	chr16:46442302-46442303	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs62020365	chr16:46442304-46442305	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs573734029	chr16:46442305-46442306	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs573818149	chr16:46442306-46442307	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs541284955	chr16:46442310-46442311	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs7196403	chr16:46442316-46442317	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs533453048	chr16:46442319-46442320	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs184097341	chr16:46442329-46442330	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs376188404	chr16:46442336-46442337	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs372211118	chr16:46442339-46442340	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs545285339	chr16:46442342-46442343	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs368759727	chr16:46442347-46442348	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs563389501	chr16:46442348-46442349	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs9929665	chr16:46442349-46442350	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs9924763	chr16:46442350-46442351	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs530792816	chr16:46442354-46442355	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs549489023	chr16:46442355-46442356	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs372092604	chr16:46442358-46442359	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs376443285	chr16:46442359-46442360	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164920	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Autism	19955444	CNVD
Schizophrenia	19955444	CNVD
Renal cell carcinoma	18765545	CNVD
Sudden cardiac death	19188705	CNVD
Multiple myeloma	16616336	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21364760	CNVD
Ewing''s sarcoma	17952124	CNVD
Myelofibrosis	22110671	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:198 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:46419800-46444400	ZNF genes & repeats	Primary T cells from cord blood	blood
2	chr16:46431200-46444800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
3	chr16:46431200-46445000	ZNF genes & repeats	Dnd41	blood
4	chr16:46431200-46447000	ZNF genes & repeats	HMEC	breast
5	chr16:46431200-46456000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr16:46431200-46456200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr16:46431200-46456200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
8	chr16:46431200-46456400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
9	chr16:46431200-46456400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
10	chr16:46431200-46456400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
11	chr16:46431200-46456400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
12	chr16:46431200-46456400	ZNF genes & repeats	Liver	Liver
13	chr16:46431200-46456400	ZNF genes & repeats	HUVEC	blood vessel
14	chr16:46431200-46456600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr16:46431200-46456600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
16	chr16:46431200-46456600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
17	chr16:46434200-46456200	ZNF genes & repeats	Fetal Brain Male	brain
18	chr16:46434200-46456800	ZNF genes & repeats	Adipose Nuclei	Adipose
19	chr16:46434400-46451800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
20	chr16:46434400-46452200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
21	chr16:46434600-46445400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
22	chr16:46434600-46456000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
23	chr16:46434600-46456200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
24	chr16:46434600-46456200	ZNF genes & repeats	Fetal Heart	heart
25	chr16:46434600-46456400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr16:46434600-46456400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
27	chr16:46434600-46456400	ZNF genes & repeats	Fetal Lung	lung
28	chr16:46434800-46456600	ZNF genes & repeats	HepG2	liver
29	chr16:46435400-46444400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
30	chr16:46435400-46449200	ZNF genes & repeats	Fetal Kidney	kidney
31	chr16:46435400-46456000	ZNF genes & repeats	K562	blood
32	chr16:46436600-46446400	ZNF genes & repeats	Brain Anterior Caudate	brain
33	chr16:46436800-46445600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
34	chr16:46437000-46446200	ZNF genes & repeats	Brain Substantia Nigra	brain
35	chr16:46437400-46444200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
36	chr16:46437400-46444400	ZNF genes & repeats	Brain Hippocampus Middle	brain
37	chr16:46437400-46444600	ZNF genes & repeats	Brain Angular Gyrus	brain
38	chr16:46437600-46444400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
39	chr16:46437800-46452800	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
40	chr16:46438000-46443600	Weak transcription	NHDF-Ad	bronchial
41	chr16:46440800-46442400	ZNF genes & repeats	NHLF	lung
42	chr16:46441800-46442400	ZNF genes & repeats	Colon Smooth Muscle	Colon
43	chr16:46442200-46442400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr16:46442400-46443600	Weak transcription	Colon Smooth Muscle	Colon
45	chr16:46442600-46444200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
46	chr16:46442600-46444200	ZNF genes & repeats	GM12878-XiMat	blood
47	chr16:46443200-46444400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
48	chr16:46443200-46444400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr16:46443200-46450400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr16:46443400-46444200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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