Variant report

Variant	nsv572486
Chromosome Location	chr16:46442349-46498901
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SHCBP1-4	chr16:46477853-46478542	ucscGeneNc_uc002eex_1

Extended variants
information (count: 4236 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:4236 , 50 per page) page: 1 2 3 4 5 6 7 ... 85

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9929665	chr16:46442349-46442350	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs9924763	chr16:46442350-46442351	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs530792816	chr16:46442354-46442355	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs549489023	chr16:46442355-46442356	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs372092604	chr16:46442358-46442359	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs376443285	chr16:46442359-46442360	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs368204131	chr16:46442364-46442365	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs62020367	chr16:46442369-46442370	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs567668889	chr16:46442371-46442372	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs528540872	chr16:46442373-46442374	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs377662863	chr16:46442374-46442375	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs546487401	chr16:46442375-46442376	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs202198180	chr16:46442376-46442377	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs538984242	chr16:46442377-46442378	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs62020368	chr16:46442380-46442381	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs568907876	chr16:46442381-46442382	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs374720904	chr16:46442382-46442383	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs535887566	chr16:46442384-46442385	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs62020369	chr16:46442387-46442388	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs367678651	chr16:46442390-46442391	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs371554788	chr16:46442396-46442397	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs554519685	chr16:46442397-46442398	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs572853737	chr16:46442406-46442407	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs62020371	chr16:46442419-46442420	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs200466926	chr16:46442423-46442424	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs189017696	chr16:46442429-46442430	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs528682234	chr16:46442448-46442449	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs571624255	chr16:46442456-46442457	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs376524252	chr16:46442459-46442460	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs63749390	chr16:46442465-46442466	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs553328277	chr16:46442470-46442471	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs577811838	chr16:46442471-46442472	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs375897184	chr16:46442507-46442508	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs545322590	chr16:46442516-46442517	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs201780037	chr16:46442535-46442536	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs563622399	chr16:46442537-46442538	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs531074255	chr16:46442541-46442542	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs369460653	chr16:46442547-46442548	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs542659155	chr16:46442548-46442549	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs201995674	chr16:46442552-46442553	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs561296635	chr16:46442553-46442554	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs62020374	chr16:46442568-46442569	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs62020375	chr16:46442576-46442577	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs62020376	chr16:46442578-46442579	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs200262339	chr16:46442580-46442581	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs528619605	chr16:46442587-46442588	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs547068470	chr16:46442593-46442594	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs571497725	chr16:46442594-46442595	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs532333697	chr16:46442598-46442599	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs62020377	chr16:46442615-46442616	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164920	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Autism	19955444	CNVD
Schizophrenia	19955444	CNVD
Renal cell carcinoma	18765545	CNVD
Sudden cardiac death	19188705	CNVD
Multiple myeloma	16616336	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21364760	CNVD
Ewing''s sarcoma	17952124	CNVD
Myelofibrosis	22110671	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:181 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:46419800-46444400	ZNF genes & repeats	Primary T cells from cord blood	blood
2	chr16:46431200-46444800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
3	chr16:46431200-46445000	ZNF genes & repeats	Dnd41	blood
4	chr16:46431200-46447000	ZNF genes & repeats	HMEC	breast
5	chr16:46431200-46456000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr16:46431200-46456200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr16:46431200-46456200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
8	chr16:46431200-46456400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
9	chr16:46431200-46456400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
10	chr16:46431200-46456400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
11	chr16:46431200-46456400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
12	chr16:46431200-46456400	ZNF genes & repeats	Liver	Liver
13	chr16:46431200-46456400	ZNF genes & repeats	HUVEC	blood vessel
14	chr16:46431200-46456600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr16:46431200-46456600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
16	chr16:46431200-46456600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
17	chr16:46434200-46456200	ZNF genes & repeats	Fetal Brain Male	brain
18	chr16:46434200-46456800	ZNF genes & repeats	Adipose Nuclei	Adipose
19	chr16:46434400-46451800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
20	chr16:46434400-46452200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
21	chr16:46434600-46445400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
22	chr16:46434600-46456000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
23	chr16:46434600-46456200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
24	chr16:46434600-46456200	ZNF genes & repeats	Fetal Heart	heart
25	chr16:46434600-46456400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr16:46434600-46456400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
27	chr16:46434600-46456400	ZNF genes & repeats	Fetal Lung	lung
28	chr16:46434800-46456600	ZNF genes & repeats	HepG2	liver
29	chr16:46435400-46444400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
30	chr16:46435400-46449200	ZNF genes & repeats	Fetal Kidney	kidney
31	chr16:46435400-46456000	ZNF genes & repeats	K562	blood
32	chr16:46436600-46446400	ZNF genes & repeats	Brain Anterior Caudate	brain
33	chr16:46436800-46445600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
34	chr16:46437000-46446200	ZNF genes & repeats	Brain Substantia Nigra	brain
35	chr16:46437400-46444200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
36	chr16:46437400-46444400	ZNF genes & repeats	Brain Hippocampus Middle	brain
37	chr16:46437400-46444600	ZNF genes & repeats	Brain Angular Gyrus	brain
38	chr16:46437600-46444400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
39	chr16:46437800-46452800	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
40	chr16:46438000-46443600	Weak transcription	NHDF-Ad	bronchial
41	chr16:46440800-46442400	ZNF genes & repeats	NHLF	lung
42	chr16:46441800-46442400	ZNF genes & repeats	Colon Smooth Muscle	Colon
43	chr16:46442200-46442400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr16:46442400-46443600	Weak transcription	Colon Smooth Muscle	Colon
45	chr16:46442600-46444200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
46	chr16:46442600-46444200	ZNF genes & repeats	GM12878-XiMat	blood
47	chr16:46443200-46444400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
48	chr16:46443200-46444400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr16:46443200-46450400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr16:46443400-46444200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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