Variant report

Variant	nsv572489
Chromosome Location	chr16:46445148-46498878
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SHCBP1-4	chr16:46477853-46478542	ucscGeneNc_uc002eex_1

Extended variants
information (count: 3684 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:3684 , 50 per page) page: 1 2 3 4 5 6 7 ... 74

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12921424	chr16:46445148-46445149	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs535994092	chr16:46445152-46445153	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs80143716	chr16:46445156-46445157	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs79281496	chr16:46445159-46445160	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs572566380	chr16:46445175-46445176	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs79150297	chr16:46445176-46445177	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs534907985	chr16:46445178-46445179	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs553102669	chr16:46445186-46445187	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs76548656	chr16:46445191-46445192	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs577924609	chr16:46445192-46445193	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs545285666	chr16:46445193-46445194	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs111727042	chr16:46445199-46445200	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs563578372	chr16:46445202-46445203	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs80046522	chr16:46445208-46445209	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs113054836	chr16:46445210-46445211	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs75772260	chr16:46445213-46445214	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs75999257	chr16:46445215-46445216	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs76557988	chr16:46445216-46445217	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs77524458	chr16:46445224-46445225	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs79193740	chr16:46445225-46445226	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs78349831	chr16:46445227-46445228	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs542622085	chr16:46445230-46445231	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs75088283	chr16:46445242-46445243	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs561456916	chr16:46445243-46445244	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs75443549	chr16:46445244-46445245	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs528549618	chr16:46445253-46445254	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs201347507	chr16:46445261-46445262	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs544582874	chr16:46445263-46445264	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs12924731	chr16:46445274-46445275	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs75904533	chr16:46445275-46445276	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs74939261	chr16:46445277-46445278	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs532498565	chr16:46445278-46445279	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs550832086	chr16:46445286-46445287	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs568797916	chr16:46445287-46445288	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs536257171	chr16:46445294-46445295	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs80355818	chr16:46445296-46445297	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs200915053	chr16:46445297-46445298	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs547846915	chr16:46445308-46445309	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs566230833	chr16:46445312-46445313	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs201853683	chr16:46445313-46445314	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs79576304	chr16:46445315-46445316	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs533600515	chr16:46445322-46445323	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs75756902	chr16:46445323-46445324	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs76286499	chr16:46445324-46445325	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs577811801	chr16:46445335-46445336	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs374296082	chr16:46445336-46445337	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs79085911	chr16:46445338-46445339	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs575820359	chr16:46445344-46445345	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs368799989	chr16:46445346-46445347	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs201732902	chr16:46445351-46445352	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164920	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Autism	19955444	CNVD
Schizophrenia	19955444	CNVD
Renal cell carcinoma	18765545	CNVD
Sudden cardiac death	19188705	CNVD
Multiple myeloma	16616336	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21364760	CNVD
Ewing''s sarcoma	17952124	CNVD
Myelofibrosis	22110671	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:139 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:46431200-46447000	ZNF genes & repeats	HMEC	breast
2	chr16:46431200-46456000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
3	chr16:46431200-46456200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr16:46431200-46456200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
5	chr16:46431200-46456400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
6	chr16:46431200-46456400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr16:46431200-46456400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
8	chr16:46431200-46456400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
9	chr16:46431200-46456400	ZNF genes & repeats	Liver	Liver
10	chr16:46431200-46456400	ZNF genes & repeats	HUVEC	blood vessel
11	chr16:46431200-46456600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr16:46431200-46456600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
13	chr16:46431200-46456600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
14	chr16:46434200-46456200	ZNF genes & repeats	Fetal Brain Male	brain
15	chr16:46434200-46456800	ZNF genes & repeats	Adipose Nuclei	Adipose
16	chr16:46434400-46451800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
17	chr16:46434400-46452200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
18	chr16:46434600-46445400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
19	chr16:46434600-46456000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
20	chr16:46434600-46456200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
21	chr16:46434600-46456200	ZNF genes & repeats	Fetal Heart	heart
22	chr16:46434600-46456400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr16:46434600-46456400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
24	chr16:46434600-46456400	ZNF genes & repeats	Fetal Lung	lung
25	chr16:46434800-46456600	ZNF genes & repeats	HepG2	liver
26	chr16:46435400-46449200	ZNF genes & repeats	Fetal Kidney	kidney
27	chr16:46435400-46456000	ZNF genes & repeats	K562	blood
28	chr16:46436600-46446400	ZNF genes & repeats	Brain Anterior Caudate	brain
29	chr16:46436800-46445600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
30	chr16:46437000-46446200	ZNF genes & repeats	Brain Substantia Nigra	brain
31	chr16:46437800-46452800	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
32	chr16:46443200-46450400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr16:46443400-46445600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
34	chr16:46443400-46446400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
35	chr16:46444000-46445200	Weak transcription	NHDF-Ad	bronchial
36	chr16:46445400-46446000	Weak transcription	NHDF-Ad	bronchial
37	chr16:46446600-46456000	ZNF genes & repeats	GM12878-XiMat	blood
38	chr16:46447200-46456400	ZNF genes & repeats	Brain Anterior Caudate	brain
39	chr16:46448200-46449000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
40	chr16:46448200-46449200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
41	chr16:46448200-46449400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
42	chr16:46448200-46450800	ZNF genes & repeats	Primary B cells from cord blood	blood
43	chr16:46448200-46455600	ZNF genes & repeats	Brain Angular Gyrus	brain
44	chr16:46448200-46455800	ZNF genes & repeats	Brain Substantia Nigra	brain
45	chr16:46448400-46448800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr16:46448400-46448800	ZNF genes & repeats	Gastric	stomach
47	chr16:46448400-46448800	ZNF genes & repeats	NHLF	lung
48	chr16:46448400-46449000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
49	chr16:46448400-46449000	ZNF genes & repeats	NH-A	brain
50	chr16:46448400-46450400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle

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