Variant report

Variant	nsv572495
Chromosome Location	chr16:46445713-46499280
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SHCBP1-4	chr16:46477853-46478542	ucscGeneNc_uc002eex_1

Extended variants
information (count: 3672 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:3672 , 50 per page) page: 1 2 3 4 5 6 7 ... 74

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6598782	chr16:46445713-46445714	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs77765847	chr16:46445724-46445725	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs79144413	chr16:46445725-46445726	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs77321694	chr16:46445728-46445729	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs199508578	chr16:46445732-46445733	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs76817070	chr16:46445738-46445739	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs75378968	chr16:46445742-46445743	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs79357272	chr16:46445753-46445754	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs376722351	chr16:46445758-46445759	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs36144305	chr16:46445760-46445761	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs560765651	chr16:46445775-46445776	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs74191936	chr16:46445782-46445783	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs78358950	chr16:46445786-46445787	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs76207343	chr16:46445791-46445792	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs552655547	chr16:46445792-46445793	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs528241838	chr16:46445805-46445806	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs75210388	chr16:46445809-46445810	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs201623676	chr16:46445814-46445815	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs551721139	chr16:46445829-46445830	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs199743032	chr16:46445834-46445835	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs75313585	chr16:46445839-46445840	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs76722876	chr16:46445848-46445849	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs35305763	chr16:46445871-46445872	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs186900403	chr16:46445872-46445873	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs75699011	chr16:46445875-46445876	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs75101068	chr16:46445885-46445886	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs199950118	chr16:46445887-46445888	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs74350530	chr16:46445890-46445891	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs75236198	chr16:46445897-46445898	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs374069121	chr16:46445898-46445899	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs540072706	chr16:46445902-46445903	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs77055189	chr16:46445903-46445904	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs113822657	chr16:46445910-46445911	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs531267295	chr16:46445916-46445917	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs551194879	chr16:46445917-46445918	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs569347737	chr16:46445920-46445921	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs36182250	chr16:46445923-46445924	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs536978740	chr16:46445924-46445925	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs377593996	chr16:46445941-46445942	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs112965720	chr16:46445977-46445978	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs555283809	chr16:46445982-46445983	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs117972422	chr16:46445986-46445987	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs567133620	chr16:46445995-46445996	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs369442703	chr16:46445996-46445997	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs534203494	chr16:46445999-46446000	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs558948151	chr16:46446000-46446001	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs577278883	chr16:46446013-46446014	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs537945227	chr16:46446020-46446021	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs556372058	chr16:46446032-46446033	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs368069865	chr16:46446038-46446039	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164920	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Autism	19955444	CNVD
Schizophrenia	19955444	CNVD
Renal cell carcinoma	18765545	CNVD
Sudden cardiac death	19188705	CNVD
Multiple myeloma	16616336	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21364760	CNVD
Ewing''s sarcoma	17952124	CNVD
Myelofibrosis	22110671	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:140 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:46431200-46447000	ZNF genes & repeats	HMEC	breast
2	chr16:46431200-46456000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
3	chr16:46431200-46456200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr16:46431200-46456200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
5	chr16:46431200-46456400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
6	chr16:46431200-46456400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr16:46431200-46456400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
8	chr16:46431200-46456400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
9	chr16:46431200-46456400	ZNF genes & repeats	Liver	Liver
10	chr16:46431200-46456400	ZNF genes & repeats	HUVEC	blood vessel
11	chr16:46431200-46456600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr16:46431200-46456600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
13	chr16:46431200-46456600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
14	chr16:46434200-46456200	ZNF genes & repeats	Fetal Brain Male	brain
15	chr16:46434200-46456800	ZNF genes & repeats	Adipose Nuclei	Adipose
16	chr16:46434400-46451800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
17	chr16:46434400-46452200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
18	chr16:46434600-46456000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
19	chr16:46434600-46456200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
20	chr16:46434600-46456200	ZNF genes & repeats	Fetal Heart	heart
21	chr16:46434600-46456400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr16:46434600-46456400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
23	chr16:46434600-46456400	ZNF genes & repeats	Fetal Lung	lung
24	chr16:46434800-46456600	ZNF genes & repeats	HepG2	liver
25	chr16:46435400-46449200	ZNF genes & repeats	Fetal Kidney	kidney
26	chr16:46435400-46456000	ZNF genes & repeats	K562	blood
27	chr16:46436600-46446400	ZNF genes & repeats	Brain Anterior Caudate	brain
28	chr16:46437000-46446200	ZNF genes & repeats	Brain Substantia Nigra	brain
29	chr16:46437800-46452800	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
30	chr16:46443200-46450400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr16:46443400-46446400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
32	chr16:46445400-46446000	Weak transcription	NHDF-Ad	bronchial
33	chr16:46446600-46456000	ZNF genes & repeats	GM12878-XiMat	blood
34	chr16:46447200-46456400	ZNF genes & repeats	Brain Anterior Caudate	brain
35	chr16:46448200-46449000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
36	chr16:46448200-46449200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
37	chr16:46448200-46449400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
38	chr16:46448200-46450800	ZNF genes & repeats	Primary B cells from cord blood	blood
39	chr16:46448200-46455600	ZNF genes & repeats	Brain Angular Gyrus	brain
40	chr16:46448200-46455800	ZNF genes & repeats	Brain Substantia Nigra	brain
41	chr16:46448400-46448800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr16:46448400-46448800	ZNF genes & repeats	Gastric	stomach
43	chr16:46448400-46448800	ZNF genes & repeats	NHLF	lung
44	chr16:46448400-46449000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
45	chr16:46448400-46449000	ZNF genes & repeats	NH-A	brain
46	chr16:46448400-46450400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
47	chr16:46448400-46450600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
48	chr16:46448400-46450600	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
49	chr16:46448400-46450600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
50	chr16:46448400-46453000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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