Variant report

Variant	nsv572505
Chromosome Location	chr16:46450037-46500451
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SHCBP1-4	chr16:46477853-46478542	ucscGeneNc_uc002eex_1

Extended variants
information (count: 3140 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:3140 , 50 per page) page: 1 2 3 4 5 6 7 ... 63

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs13332184	chr16:46450037-46450038	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs79673218	chr16:46450038-46450039	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs62021013	chr16:46450039-46450040	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs62021014	chr16:46450046-46450047	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs80215751	chr16:46450050-46450051	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs372940151	chr16:46450057-46450058	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs80314075	chr16:46450059-46450060	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs541036148	chr16:46450061-46450062	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs376698178	chr16:46450062-46450063	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs559798801	chr16:46450065-46450066	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs533230528	chr16:46450066-46450067	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs201731391	chr16:46450075-46450076	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs369644169	chr16:46450077-46450078	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs373838802	chr16:46450081-46450082	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs377506080	chr16:46450082-46450083	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs370386597	chr16:46450087-46450088	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs563472847	chr16:46450088-46450089	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs139716851	chr16:46450092-46450093	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs530857134	chr16:46450099-46450100	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs374788031	chr16:46450100-46450101	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs377560051	chr16:46450107-46450108	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs140403931	chr16:46450108-46450109	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs148997679	chr16:46450109-46450110	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs528111491	chr16:46450110-46450111	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs200182308	chr16:46450114-46450115	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs371093741	chr16:46450115-46450116	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs199679963	chr16:46450117-46450118	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs375394036	chr16:46450122-46450123	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs201005676	chr16:46450125-46450126	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs372337292	chr16:46450139-46450140	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs546233820	chr16:46450149-46450150	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs145074187	chr16:46450150-46450151	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs374065165	chr16:46450156-46450157	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs571359146	chr16:46450161-46450162	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs138093594	chr16:46450162-46450163	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs148421686	chr16:46450166-46450167	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs35376524	chr16:46450175-46450176	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs557958092	chr16:46450180-46450181	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs569895935	chr16:46450183-46450184	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs143658629	chr16:46450184-46450185	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs555659929	chr16:46450185-46450186	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs573947539	chr16:46450190-46450191	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs374536133	chr16:46450198-46450199	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs367963537	chr16:46450200-46450201	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs541427284	chr16:46450207-46450208	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs142816834	chr16:46450211-46450212	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs553084967	chr16:46450215-46450216	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs112866805	chr16:46450219-46450220	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs143141995	chr16:46450221-46450222	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs578085700	chr16:46450237-46450238	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164920	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Autism	19955444	CNVD
Schizophrenia	19955444	CNVD
Renal cell carcinoma	18765545	CNVD
Sudden cardiac death	19188705	CNVD
Multiple myeloma	16616336	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21364760	CNVD
Ewing''s sarcoma	17952124	CNVD
Myelofibrosis	22110671	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:138 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:46431200-46456000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
2	chr16:46431200-46456200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr16:46431200-46456200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
4	chr16:46431200-46456400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
5	chr16:46431200-46456400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr16:46431200-46456400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
7	chr16:46431200-46456400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr16:46431200-46456400	ZNF genes & repeats	Liver	Liver
9	chr16:46431200-46456400	ZNF genes & repeats	HUVEC	blood vessel
10	chr16:46431200-46456600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr16:46431200-46456600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
12	chr16:46431200-46456600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
13	chr16:46434200-46456200	ZNF genes & repeats	Fetal Brain Male	brain
14	chr16:46434200-46456800	ZNF genes & repeats	Adipose Nuclei	Adipose
15	chr16:46434400-46451800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
16	chr16:46434400-46452200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
17	chr16:46434600-46456000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
18	chr16:46434600-46456200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
19	chr16:46434600-46456200	ZNF genes & repeats	Fetal Heart	heart
20	chr16:46434600-46456400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr16:46434600-46456400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
22	chr16:46434600-46456400	ZNF genes & repeats	Fetal Lung	lung
23	chr16:46434800-46456600	ZNF genes & repeats	HepG2	liver
24	chr16:46435400-46456000	ZNF genes & repeats	K562	blood
25	chr16:46437800-46452800	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
26	chr16:46443200-46450400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr16:46446600-46456000	ZNF genes & repeats	GM12878-XiMat	blood
28	chr16:46447200-46456400	ZNF genes & repeats	Brain Anterior Caudate	brain
29	chr16:46448200-46450800	ZNF genes & repeats	Primary B cells from cord blood	blood
30	chr16:46448200-46455600	ZNF genes & repeats	Brain Angular Gyrus	brain
31	chr16:46448200-46455800	ZNF genes & repeats	Brain Substantia Nigra	brain
32	chr16:46448400-46450400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
33	chr16:46448400-46450600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
34	chr16:46448400-46450600	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
35	chr16:46448400-46450600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
36	chr16:46448400-46453000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr16:46449000-46456200	ZNF genes & repeats	Brain Hippocampus Middle	brain
38	chr16:46450000-46450200	ZNF genes & repeats	A549	lung
39	chr16:46450200-46450400	ZNF genes & repeats	Rectal Smooth Muscle	rectum
40	chr16:46450200-46450600	ZNF genes & repeats	Stomach Mucosa	stomach
41	chr16:46450400-46453000	ZNF genes & repeats	Dnd41	blood
42	chr16:46450600-46452200	Weak transcription	Stomach Mucosa	stomach
43	chr16:46451000-46452800	ZNF genes & repeats	Aorta	Aorta
44	chr16:46451000-46454000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
45	chr16:46451200-46456200	ZNF genes & repeats	Primary T cells from cord blood	blood
46	chr16:46451400-46456200	ZNF genes & repeats	Fetal Kidney	kidney
47	chr16:46451800-46452800	ZNF genes & repeats	NH-A	brain
48	chr16:46452200-46452400	ZNF genes & repeats	Stomach Mucosa	stomach
49	chr16:46452200-46454000	ZNF genes & repeats	Colon Smooth Muscle	Colon
50	chr16:46452200-46456200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood

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