Variant report

Variant	nsv572507
Chromosome Location	chr16:46451742-46500451
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SHCBP1-4	chr16:46477853-46478542	ucscGeneNc_uc002eex_1

Extended variants
information (count: 2837 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:2837 , 50 per page) page: 1 2 3 4 5 6 7 ... 57

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs28770169	chr16:46451742-46451743	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs553520598	chr16:46451743-46451744	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs111238945	chr16:46451746-46451747	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs572021307	chr16:46451747-46451748	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs144422824	chr16:46451751-46451752	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs539032911	chr16:46451762-46451763	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs368779332	chr16:46451764-46451765	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs75945251	chr16:46451771-46451772	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs557887538	chr16:46451783-46451784	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs28868065	chr16:46451784-46451785	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs544859060	chr16:46451785-46451786	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs563069627	chr16:46451786-46451787	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs575057429	chr16:46451789-46451790	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs542494610	chr16:46451791-46451792	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs371327353	chr16:46451795-46451796	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs560590799	chr16:46451801-46451802	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs527706814	chr16:46451802-46451803	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs112194372	chr16:46451810-46451811	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs200384972	chr16:46451812-46451813	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs552106394	chr16:46451822-46451823	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs564252455	chr16:46451823-46451824	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs62021017	chr16:46451825-46451826	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs140118365	chr16:46451828-46451829	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs549614144	chr16:46451829-46451830	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs145678797	chr16:46451833-46451834	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs568225895	chr16:46451836-46451837	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs112028939	chr16:46451840-46451841	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs62021018	chr16:46451843-46451844	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs372525325	chr16:46451844-46451845	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs565787664	chr16:46451851-46451852	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs377071337	chr16:46451853-46451854	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs369430537	chr16:46451854-46451855	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs373819773	chr16:46451855-46451856	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs557777435	chr16:46451860-46451861	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs28855814	chr16:46451861-46451862	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs62021019	chr16:46451866-46451867	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs537120152	chr16:46451867-46451868	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs556830773	chr16:46451872-46451873	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs62021020	chr16:46451874-46451875	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs145942131	chr16:46451875-46451876	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs574993162	chr16:46451876-46451877	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs542030388	chr16:46451877-46451878	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs560843092	chr16:46451878-46451879	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs112372636	chr16:46451882-46451883	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs200461305	chr16:46451889-46451890	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs201535206	chr16:46451892-46451893	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs75107347	chr16:46451898-46451899	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs79146261	chr16:46451899-46451900	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs78219849	chr16:46451900-46451901	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs62021021	chr16:46451901-46451902	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164920	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Autism	19955444	CNVD
Schizophrenia	19955444	CNVD
Renal cell carcinoma	18765545	CNVD
Sudden cardiac death	19188705	CNVD
Multiple myeloma	16616336	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21364760	CNVD
Ewing''s sarcoma	17952124	CNVD
Myelofibrosis	22110671	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:129 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:46431200-46456000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
2	chr16:46431200-46456200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr16:46431200-46456200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
4	chr16:46431200-46456400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
5	chr16:46431200-46456400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr16:46431200-46456400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
7	chr16:46431200-46456400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr16:46431200-46456400	ZNF genes & repeats	Liver	Liver
9	chr16:46431200-46456400	ZNF genes & repeats	HUVEC	blood vessel
10	chr16:46431200-46456600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr16:46431200-46456600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
12	chr16:46431200-46456600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
13	chr16:46434200-46456200	ZNF genes & repeats	Fetal Brain Male	brain
14	chr16:46434200-46456800	ZNF genes & repeats	Adipose Nuclei	Adipose
15	chr16:46434400-46451800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
16	chr16:46434400-46452200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
17	chr16:46434600-46456000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
18	chr16:46434600-46456200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
19	chr16:46434600-46456200	ZNF genes & repeats	Fetal Heart	heart
20	chr16:46434600-46456400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr16:46434600-46456400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
22	chr16:46434600-46456400	ZNF genes & repeats	Fetal Lung	lung
23	chr16:46434800-46456600	ZNF genes & repeats	HepG2	liver
24	chr16:46435400-46456000	ZNF genes & repeats	K562	blood
25	chr16:46437800-46452800	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
26	chr16:46446600-46456000	ZNF genes & repeats	GM12878-XiMat	blood
27	chr16:46447200-46456400	ZNF genes & repeats	Brain Anterior Caudate	brain
28	chr16:46448200-46455600	ZNF genes & repeats	Brain Angular Gyrus	brain
29	chr16:46448200-46455800	ZNF genes & repeats	Brain Substantia Nigra	brain
30	chr16:46448400-46453000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr16:46449000-46456200	ZNF genes & repeats	Brain Hippocampus Middle	brain
32	chr16:46450400-46453000	ZNF genes & repeats	Dnd41	blood
33	chr16:46450600-46452200	Weak transcription	Stomach Mucosa	stomach
34	chr16:46451000-46452800	ZNF genes & repeats	Aorta	Aorta
35	chr16:46451000-46454000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
36	chr16:46451200-46456200	ZNF genes & repeats	Primary T cells from cord blood	blood
37	chr16:46451400-46456200	ZNF genes & repeats	Fetal Kidney	kidney
38	chr16:46451800-46452800	ZNF genes & repeats	NH-A	brain
39	chr16:46452200-46452400	ZNF genes & repeats	Stomach Mucosa	stomach
40	chr16:46452200-46454000	ZNF genes & repeats	Colon Smooth Muscle	Colon
41	chr16:46452200-46456200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr16:46452800-46455600	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
43	chr16:46454000-46455400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
44	chr16:46454000-46455800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
45	chr16:46454600-46456200	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
46	chr16:46455000-46455200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
47	chr16:46455000-46455200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
48	chr16:46455000-46455800	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
49	chr16:46455000-46455800	ZNF genes & repeats	Colon Smooth Muscle	Colon
50	chr16:46455200-46456000	ZNF genes & repeats	Muscle Satellite Cultured Cells	--

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