Variant report

Variant	nsv572512
Chromosome Location	chr16:46452565-46499463
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SHCBP1-4	chr16:46477853-46478542	ucscGeneNc_uc002eex_1

Extended variants
information (count: 2469 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:2469 , 50 per page) page: 1 2 3 4 5 6 7 ... 50

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4369699	chr16:46452565-46452566	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs74373526	chr16:46452569-46452570	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs75356011	chr16:46452578-46452579	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs541148700	chr16:46452579-46452580	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs75196953	chr16:46452580-46452581	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs77036306	chr16:46452581-46452582	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs78035728	chr16:46452586-46452587	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs76918643	chr16:46452592-46452593	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs74663086	chr16:46452604-46452605	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs370826926	chr16:46452613-46452614	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs78219653	chr16:46452629-46452630	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs77794970	chr16:46452630-46452631	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs559763189	chr16:46452641-46452642	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs78432310	chr16:46452642-46452643	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs75634209	chr16:46452653-46452654	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs75134708	chr16:46452658-46452659	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs577935245	chr16:46452664-46452665	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs77987490	chr16:46452667-46452668	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs143403867	chr16:46452668-46452669	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs545179525	chr16:46452670-46452671	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs75152055	chr16:46452673-46452674	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs563585299	chr16:46452674-46452675	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs79871438	chr16:46452676-46452677	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs78826856	chr16:46452686-46452687	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs77114240	chr16:46452687-46452688	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs75999703	chr16:46452690-46452691	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs530817137	chr16:46452693-46452694	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs76302189	chr16:46452696-46452697	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs151161512	chr16:46452703-46452704	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs75842082	chr16:46452713-46452714	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs80260864	chr16:46452717-46452718	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs36154358	chr16:46452718-46452719	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs560703310	chr16:46452723-46452724	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs36188073	chr16:46452729-46452730	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs528225784	chr16:46452736-46452737	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs77393617	chr16:46452738-46452739	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs147112192	chr16:46452739-46452740	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs546395514	chr16:46452748-46452749	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs189006548	chr16:46452749-46452750	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs374705654	chr16:46452752-46452753	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs539653207	chr16:46452759-46452760	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs74828595	chr16:46452762-46452763	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs551547827	chr16:46452788-46452789	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs77978560	chr16:46452790-46452791	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs80353645	chr16:46452794-46452795	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs75396255	chr16:46452798-46452799	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs79061749	chr16:46452799-46452800	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs77877455	chr16:46452803-46452804	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs78678748	chr16:46452805-46452806	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs62021029	chr16:46452808-46452809	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164920	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Autism	19955444	CNVD
Schizophrenia	19955444	CNVD
Renal cell carcinoma	18765545	CNVD
Sudden cardiac death	19188705	CNVD
Multiple myeloma	16616336	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21364760	CNVD
Ewing''s sarcoma	17952124	CNVD
Myelofibrosis	22110671	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:46431200-46456000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
2	chr16:46431200-46456200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr16:46431200-46456200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
4	chr16:46431200-46456400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
5	chr16:46431200-46456400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr16:46431200-46456400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
7	chr16:46431200-46456400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr16:46431200-46456400	ZNF genes & repeats	Liver	Liver
9	chr16:46431200-46456400	ZNF genes & repeats	HUVEC	blood vessel
10	chr16:46431200-46456600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr16:46431200-46456600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
12	chr16:46431200-46456600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
13	chr16:46434200-46456200	ZNF genes & repeats	Fetal Brain Male	brain
14	chr16:46434200-46456800	ZNF genes & repeats	Adipose Nuclei	Adipose
15	chr16:46434600-46456000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
16	chr16:46434600-46456200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
17	chr16:46434600-46456200	ZNF genes & repeats	Fetal Heart	heart
18	chr16:46434600-46456400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr16:46434600-46456400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
20	chr16:46434600-46456400	ZNF genes & repeats	Fetal Lung	lung
21	chr16:46434800-46456600	ZNF genes & repeats	HepG2	liver
22	chr16:46435400-46456000	ZNF genes & repeats	K562	blood
23	chr16:46437800-46452800	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
24	chr16:46446600-46456000	ZNF genes & repeats	GM12878-XiMat	blood
25	chr16:46447200-46456400	ZNF genes & repeats	Brain Anterior Caudate	brain
26	chr16:46448200-46455600	ZNF genes & repeats	Brain Angular Gyrus	brain
27	chr16:46448200-46455800	ZNF genes & repeats	Brain Substantia Nigra	brain
28	chr16:46448400-46453000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr16:46449000-46456200	ZNF genes & repeats	Brain Hippocampus Middle	brain
30	chr16:46450400-46453000	ZNF genes & repeats	Dnd41	blood
31	chr16:46451000-46452800	ZNF genes & repeats	Aorta	Aorta
32	chr16:46451000-46454000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
33	chr16:46451200-46456200	ZNF genes & repeats	Primary T cells from cord blood	blood
34	chr16:46451400-46456200	ZNF genes & repeats	Fetal Kidney	kidney
35	chr16:46451800-46452800	ZNF genes & repeats	NH-A	brain
36	chr16:46452200-46454000	ZNF genes & repeats	Colon Smooth Muscle	Colon
37	chr16:46452200-46456200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr16:46452800-46455600	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
39	chr16:46454000-46455400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
40	chr16:46454000-46455800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
41	chr16:46454600-46456200	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
42	chr16:46455000-46455200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
43	chr16:46455000-46455200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
44	chr16:46455000-46455800	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
45	chr16:46455000-46455800	ZNF genes & repeats	Colon Smooth Muscle	Colon
46	chr16:46455200-46456000	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
47	chr16:46455400-46455800	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr16:46455600-46456200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr16:46455600-46456200	Active TSS	Psoas Muscle	Psoas
50	chr16:46456800-46461000	Weak transcription	Adipose Nuclei	Adipose

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