Variant report

Variant	nsv572959
Chromosome Location	chr16:72890216-72923327
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:50)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:50 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:72893172..72894972-chr16:72898308..72901387,3	MCF-7	breast:
2	chr16:72884109..72886413-chr16:72900288..72901895,2	MCF-7	breast:
3	chr16:72907863..72909574-chr16:73028864..73030921,2	MCF-7	breast:
4	chr16:72901309..72904855-chr16:72910459..72914391,3	MCF-7	breast:
5	chr16:72882688..72884307-chr16:72909000..72911546,2	MCF-7	breast:
6	chr16:72907493..72909909-chr16:72910330..72912576,2	MCF-7	breast:
7	chr16:72910249..72913180-chr16:72960243..72962948,2	MCF-7	breast:
8	chr16:72887911..72890555-chr16:72890770..72892918,2	MCF-7	breast:
9	chr16:72907986..72911750-chr16:73080381..73083029,3	MCF-7	breast:
10	chr16:72881425..72884440-chr16:72889651..72893703,3	MCF-7	breast:
11	chr16:72897681..72899604-chr16:72909159..72912052,2	MCF-7	breast:
12	chr16:72910303..72916388-chr16:73088434..73093431,5	MCF-7	breast:
13	chr16:72919670..72921417-chr16:72922902..72924526,2	MCF-7	breast:
14	chr16:72909280..72909784-chr16:73030360..73030884,2	MCF-7	breast:
15	chr16:72914732..72917290-chr16:72920301..72922617,2	MCF-7	breast:
16	chr16:72893709..72896172-chr16:72897326..72901024,3	MCF-7	breast:
17	chr16:72890240..72891145-chr16:72994982..72995599,2	MCF-7	breast:
18	chr16:72915178..72916868-chr16:72921305..72923261,2	MCF-7	breast:
19	chr16:72899692..72902233-chr16:73090412..73092893,2	MCF-7	breast:
20	chr16:72889241..72891331-chr16:73087396..73089163,2	MCF-7	breast:
21	chr16:72893709..72896172-chr16:72897326..72901024,3	MCF-7	breast:
22	chr16:72909808..72911772-chr16:73103855..73105830,2	MCF-7	breast:
23	chr16:72906922..72909977-chr16:72911747..72914412,3	MCF-7	breast:
24	chr16:72896689..72899470-chr16:72907031..72908820,2	MCF-7	breast:
25	chr16:72896118..72897641-chr16:72899116..72900892,2	MCF-7	breast:
26	chr16:72898058..72899947-chr16:72905032..72907233,2	MCF-7	breast:
27	chr16:72900009..72904474-chr16:72907917..72911518,7	MCF-7	breast:
28	chr16:72889542..72892358-chr16:73091251..73093063,3	MCF-7	breast:
29	chr16:72877990..72879924-chr16:72900504..72903198,2	MCF-7	breast:
30	chr16:72901309..72904855-chr16:72910459..72914391,3	MCF-7	breast:
31	chr16:72893172..72894972-chr16:72898308..72901387,3	MCF-7	breast:
32	chr16:72896689..72899470-chr16:72907031..72908820,2	MCF-7	breast:
33	chr16:72897681..72899604-chr16:72909159..72912052,2	MCF-7	breast:
34	chr16:72900009..72904474-chr16:72907917..72911518,7	MCF-7	breast:
35	chr16:72882451..72883967-chr16:72893817..72896287,3	MCF-7	breast:
36	chr16:72908996..72912815-chr16:73090105..73094174,3	MCF-7	breast:
37	chr16:72898058..72899947-chr16:72905032..72907233,2	MCF-7	breast:
38	chr16:72909950..72913062-chr16:72961183..72965659,4	MCF-7	breast:
39	chr16:72902697..72904842-chr16:73086116..73088672,2	MCF-7	breast:
40	chr16:72896118..72897641-chr16:72899116..72900892,2	MCF-7	breast:
41	chr16:72914732..72917290-chr16:72920301..72922617,2	MCF-7	breast:
42	chr16:72698981..72700722-chr16:72918650..72920618,2	MCF-7	breast:
43	chr16:72869681..72872432-chr16:72909425..72912073,2	MCF-7	breast:
44	chr16:72863377..72866034-chr16:72907006..72909220,2	MCF-7	breast:
45	chr16:72866237..72867010-chr16:72890333..72890886,2	MCF-7	breast:
46	chr16:72921035..72922864-chr16:72957016..72959624,2	MCF-7	breast:
47	chr16:72906922..72909977-chr16:72911747..72914412,3	MCF-7	breast:
48	chr16:72915178..72916868-chr16:72921305..72923261,2	MCF-7	breast:
49	chr16:72907493..72909909-chr16:72910330..72912576,2	MCF-7	breast:
50	chr16:72887911..72890555-chr16:72890770..72892918,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C16orf47-3	chr16:72897138-72899169	ncRnaDb_ncrna_FR305685_1

No data

Variant related genes	Relation type
ENSG00000140836	chromatin interactions
ENSG00000272250	chromatin interactions
ENSG00000259768	chromatin interactions

Extended variants
information (count: 1367 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:1367 , 50 per page) page: 1 2 3 4 5 6 7 ... 28

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs16971335	chr16:72890216-72890217	Weak transcription Enhancers Genic enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs554796452	chr16:72890260-72890261	Weak transcription Enhancers Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs371033626	chr16:72890278-72890279	Weak transcription Enhancers Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs550439284	chr16:72890284-72890285	Weak transcription Enhancers Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs572969990	chr16:72890287-72890288	Weak transcription Enhancers Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs149626075	chr16:72890311-72890312	Weak transcription Enhancers Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs147293058	chr16:72890329-72890330	Weak transcription Enhancers Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs79315071	chr16:72890338-72890339	Weak transcription Enhancers Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs544123656	chr16:72890343-72890344	Weak transcription Enhancers Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs75310956	chr16:72890378-72890379	Weak transcription Enhancers Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs529675707	chr16:72890435-72890436	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs548246795	chr16:72890448-72890449	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs201043590	chr16:72890460-72890461	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs144890156	chr16:72890470-72890471	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs528674932	chr16:72890499-72890500	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs56090769	chr16:72890523-72890524	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs538949949	chr16:72890593-72890594	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs546837007	chr16:72890646-72890647	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs78482596	chr16:72890715-72890716	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs539310891	chr16:72890749-72890750	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs551308323	chr16:72890760-72890761	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs77105164	chr16:72890823-72890824	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs536276119	chr16:72890885-72890886	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs182894426	chr16:72890886-72890887	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs573217430	chr16:72890891-72890892	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs4380061	chr16:72890912-72890913	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs534306094	chr16:72890915-72890916	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs113691189	chr16:72890932-72890933	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs558305623	chr16:72891015-72891016	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs558685957	chr16:72891084-72891085	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs147145659	chr16:72891107-72891108	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs113293384	chr16:72891130-72891131	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs142119589	chr16:72891140-72891141	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs185775142	chr16:72891219-72891220	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs574372940	chr16:72891276-72891277	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs114718271	chr16:72891280-72891281	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs560101935	chr16:72891351-72891352	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs151180101	chr16:72891396-72891397	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs552270448	chr16:72891414-72891415	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs565443624	chr16:72891415-72891416	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs140196876	chr16:72891449-72891450	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs535091905	chr16:72891497-72891498	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs554794349	chr16:72891523-72891524	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs574763399	chr16:72891531-72891532	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs111926336	chr16:72891561-72891562	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs191133442	chr16:72891584-72891585	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs111912062	chr16:72891594-72891595	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs59492312	chr16:72891595-72891596	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs72136493	chr16:72891611-72891612	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs397953454	chr16:72891615-72891616	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	17001317	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Prostate cancer	17245344	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute myeloid leukemia	16864856	CNVD
Infiltrating lobular breast cancer	19191266	CNVD
T-cell lymphomas	19863542	CNVD
Hepatocellular carcinoma	16750200	CNVD
Medulloblastoma	16783165	CNVD
Neuroblastoma	21899760	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	18628472	CNVD
Breast cancer	21806811	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21509527	CNVD
Melanoma	22183965	CNVD
small cell lung cancer	20016488	CNVD
Ependymoma	18628472	CNVD
Ewing''s sarcoma	18628472	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Autism	22102821	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Cancer	17160897	CNVD
Breast cancer	20409316	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD

Chromatin state (count:900 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72867600-72892400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr16:72873200-72891800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr16:72882400-72891800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr16:72883200-72899200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr16:72883200-72909200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr16:72883400-72891800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr16:72883400-72892200	Weak transcription	Brain Angular Gyrus	brain
8	chr16:72883400-72898400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr16:72883400-72898600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr16:72883400-72908400	Weak transcription	Fetal Intestine Large	intestine
11	chr16:72883400-72918800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr16:72883600-72890800	Weak transcription	Brain Substantia Nigra	brain
13	chr16:72883600-72891000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr16:72883600-72892200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr16:72883600-72892400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr16:72883600-72893200	Weak transcription	Fetal Intestine Small	intestine
17	chr16:72883600-72912200	Weak transcription	Ovary	ovary
18	chr16:72883800-72908800	Weak transcription	Hela-S3	cervix
19	chr16:72884200-72891400	Weak transcription	Pancreas	Pancrea
20	chr16:72884200-72892000	Weak transcription	Colon Smooth Muscle	Colon
21	chr16:72884200-72899200	Weak transcription	Liver	Liver
22	chr16:72884200-72902200	Weak transcription	Right Ventricle	heart
23	chr16:72884200-72911600	Weak transcription	Gastric	stomach
24	chr16:72884400-72892800	Weak transcription	Fetal Heart	heart
25	chr16:72885200-72891400	Weak transcription	Right Atrium	heart
26	chr16:72885200-72892400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr16:72885200-72892800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr16:72885200-72909000	Weak transcription	Lung	lung
29	chr16:72885400-72890600	Weak transcription	Osteobl	bone
30	chr16:72885400-72891800	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr16:72885400-72891800	Weak transcription	Left Ventricle	heart
32	chr16:72885400-72891800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr16:72885400-72891800	Weak transcription	NHLF	lung
34	chr16:72885400-72892000	Weak transcription	HSMMtube	muscle
35	chr16:72885400-72892400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr16:72885400-72892400	Weak transcription	HSMM	muscle
37	chr16:72885400-72898200	Weak transcription	A549	lung
38	chr16:72885600-72891000	Weak transcription	Stomach Smooth Muscle	stomach
39	chr16:72885600-72891200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr16:72885600-72891800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr16:72885800-72891400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr16:72887000-72890400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr16:72887200-72892000	Weak transcription	NH-A	brain
44	chr16:72888000-72890400	Enhancers	Fetal Brain Male	brain
45	chr16:72888200-72891600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr16:72888200-72892200	Weak transcription	Fetal Kidney	kidney
47	chr16:72888200-72893400	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr16:72888200-72893600	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr16:72888200-72894800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr16:72888400-72891600	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links