Variant report

Variant	nsv572971
Chromosome Location	chr16:74050297-74176712
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:34)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:34 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:74072390..74076455-chr16:74084925..74088103,4	MCF-7	breast:
2	chr16:74097992..74098897-chr16:74141463..74142359,4	MCF-7	breast:
3	chr16:74104331..74106027-chr16:74106747..74108589,2	MCF-7	breast:
4	chr16:73598919..73599801-chr16:74068414..74069364,3	MCF-7	breast:
5	chr16:74097992..74098897-chr16:74141463..74142359,4	MCF-7	breast:
6	chr16:74051088..74053821-chr16:74058536..74061216,2	K562	blood:
7	chr16:74052640..74055293-chr16:74061303..74063480,2	MCF-7	breast:
8	chr16:74069689..74070330-chr16:74308730..74309631,3	MCF-7	breast:
9	chr16:74104331..74106027-chr16:74106747..74108589,2	MCF-7	breast:
10	chr16:74072390..74076455-chr16:74084925..74088103,4	MCF-7	breast:
11	chr15:81148713..81149213-chr16:74074311..74075148,2	MCF-7	breast:
12	chr16:74155742..74156704-chr8:91618988..91619904,2	MCF-7	breast:
13	chr16:74045863..74048594-chr16:74065507..74067413,2	K562	blood:
14	chr16:74079958..74082316-chr16:74083747..74086462,2	MCF-7	breast:
15	chr16:74052640..74055293-chr16:74061303..74063480,2	MCF-7	breast:
16	chr16:73990291..73990950-chr16:74068417..74069327,2	MCF-7	breast:
17	chr16:74098007..74098865-chr16:74308598..74309538,5	MCF-7	breast:
18	chr16:74070917..74074428-chr16:74076100..74081028,4	K562	blood:
19	chr16:74070917..74073817-chr16:74078438..74081028,2	K562	blood:
20	chr16:74098142..74098838-chr16:74260245..74261120,2	MCF-7	breast:
21	chr16:74070917..74073817-chr16:74078438..74081028,2	K562	blood:
22	chr16:74069423..74070583-chr16:74308622..74309589,7	MCF-7	breast:
23	chr16:74069417..74070349-chr16:74141043..74142294,9	MCF-7	breast:
24	chr16:74051088..74053821-chr16:74058536..74061216,2	K562	blood:
25	chr16:74069417..74070349-chr16:74141043..74142294,9	MCF-7	breast:
26	chr16:74068477..74070420-chr16:74260250..74261186,10	MCF-7	breast:
27	chr16:74070917..74074428-chr16:74076100..74081028,4	K562	blood:
28	chr16:74079958..74082316-chr16:74083747..74086462,2	MCF-7	breast:
29	chr16:74097985..74098900-chr16:74260227..74261150,3	MCF-7	breast:
30	chr16:73747778..73748666-chr16:74068425..74068949,2	MCF-7	breast:
31	chr16:73990170..73991091-chr16:74068493..74069035,2	MCF-7	breast:
32	chr16:74076253..74078540-chr16:74083020..74085700,2	K562	blood:
33	chr16:74076253..74078540-chr16:74083020..74085700,2	K562	blood:
34	chr16:74069299..74070320-chr16:74260061..74261105,4	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CLEC18B-3	chr16:74088050-74088504	ENSG00000261404.1
2	lnc-CLEC18B-6	chr16:74106215-74106486	expReg_chr16_7681_-

No data

Extended variants
information (count: 3907 )
Associated
traits (count: 72 )

Variant overlapped rSNPs/rCNVs (count:3907 , 50 per page) page: 1 2 3 4 5 6 7 ... 79

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs13335150	chr16:74050297-74050298	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs535687636	chr16:74050309-74050310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs555986821	chr16:74050313-74050314	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs71389000	chr16:74050329-74050330	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs543113603	chr16:74050364-74050365	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs541792913	chr16:74050384-74050385	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs553797048	chr16:74050394-74050395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs150940447	chr16:74050427-74050428	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs377580226	chr16:74050468-74050469	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs532142796	chr16:74050503-74050504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs545895093	chr16:74050557-74050558	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs140685863	chr16:74050636-74050637	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs551840792	chr16:74050637-74050638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs374992845	chr16:74050686-74050687	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs548459956	chr16:74050700-74050701	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs187212657	chr16:74050759-74050760	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs561968918	chr16:74050768-74050769	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs12446782	chr16:74050769-74050770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs77218785	chr16:74050774-74050775	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs190192522	chr16:74050775-74050776	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs570496640	chr16:74050791-74050792	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs533182101	chr16:74050802-74050803	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs550219575	chr16:74050808-74050809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs182830787	chr16:74050817-74050818	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs555680595	chr16:74050832-74050833	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs13332202	chr16:74050833-74050834	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs138716742	chr16:74050907-74050908	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs141185976	chr16:74051038-74051039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs576881389	chr16:74051042-74051043	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs545831767	chr16:74051060-74051061	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs556181640	chr16:74051072-74051073	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs576057377	chr16:74051119-74051120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs146984455	chr16:74051154-74051155	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs528747414	chr16:74051248-74051249	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs561721632	chr16:74051277-74051278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs188008008	chr16:74051298-74051299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs540905478	chr16:74051370-74051371	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs548827572	chr16:74051371-74051372	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs138084842	chr16:74051380-74051381	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs149539977	chr16:74051386-74051387	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs562022083	chr16:74051463-74051464	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs113574773	chr16:74051465-74051466	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs117562736	chr16:74051516-74051517	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs192236994	chr16:74051522-74051523	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs369088776	chr16:74051523-74051524	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs74474251	chr16:74051533-74051534	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs535255655	chr16:74051555-74051556	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs371231508	chr16:74051559-74051560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs570807053	chr16:74051589-74051590	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs185882144	chr16:74051647-74051648	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:72)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	17001317	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17603634	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	17245344	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Hepatocellular carcinoma	16750200	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21806811	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21509527	CNVD
Melanoma	22183965	CNVD
small cell lung cancer	20016488	CNVD
Cancer	17160897	CNVD
Breast cancer	20409316	CNVD
Myelofibrosis	22110671	CNVD
Poland''s syndrome	22110015	CNVD
Neuroblastoma	21899760	CNVD
Liver carcinoma	19366792	CNVD
Prostate cancer	21965145	CNVD
Cancer	21183584	CNVD
Ovarian cancer	20844748	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Prostate cancer	19156837	CNVD
Acute myeloid leukemia	17377590	CNVD

Chromatin state (count:455 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:74047200-74063000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr16:74053000-74053800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr16:74053200-74054400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr16:74053200-74054600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr16:74053200-74054600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr16:74053200-74055200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr16:74053400-74054400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr16:74053400-74054400	Enhancers	Brain Germinal Matrix	brain
9	chr16:74053400-74054800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr16:74053400-74055000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr16:74053400-74055200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr16:74053400-74055600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr16:74053600-74054400	Enhancers	Fetal Brain Female	brain
14	chr16:74053600-74055400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr16:74053800-74054400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr16:74053800-74054600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr16:74054000-74054400	Enhancers	Fetal Brain Male	brain
18	chr16:74054000-74055200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr16:74054200-74054400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr16:74054400-74058200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr16:74054400-74059000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr16:74054400-74059200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr16:74054600-74054800	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr16:74054600-74058000	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr16:74054600-74058200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr16:74054800-74057800	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr16:74054800-74059200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr16:74055000-74058200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr16:74055200-74058600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr16:74055200-74058800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr16:74055400-74059000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr16:74057800-74060800	Enhancers	Thymus	Thymus
33	chr16:74057800-74061000	Enhancers	Dnd41	blood
34	chr16:74057800-74061800	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr16:74057800-74062000	Enhancers	Fetal Thymus	thymus
36	chr16:74058000-74058200	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr16:74058000-74063400	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr16:74058200-74058400	Enhancers	H9 Cell Line	embryonic stem cell
39	chr16:74058200-74058600	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr16:74058200-74059200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr16:74058200-74059200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr16:74058200-74060200	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr16:74058200-74066800	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr16:74058400-74059200	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr16:74058600-74060200	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr16:74058600-74062800	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr16:74058800-74060800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr16:74058800-74065600	Enhancers	H1 Cell Line	embryonic stem cell
49	chr16:74059000-74061000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr16:74059000-74061600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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