Variant report

Variant	nsv5759
Chromosome Location	chr7:56733825-56780475
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:19)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SUMF2-5	chr7:56736817-56737225	NONHSAT120781
2	lnc-SUMF2-5	chr7:56742545-56742773	XLOC_006112
3	lnc-SUMF2-5	chr7:56742545-56742773	XLOC_006112
4	lnc-SUMF2-5	chr7:56742545-56742773	XLOC_006112
5	lnc-SUMF2-5	chr7:56742545-56742773	XLOC_006112
6	lnc-SUMF2-5	chr7:56742545-56742773	XLOC_006112
7	lnc-SUMF2-5	chr7:56736317-56736339	XLOC_006112
8	lnc-SUMF2-5	chr7:56736208-56736339	XLOC_006112
9	lnc-SUMF2-5	chr7:56736043-56736339	NONHSAT120789
10	lnc-SUMF2-5	chr7:56735700-56735944	NONHSAT120787
11	lnc-SUMF2-5	chr7:56736818-56737219	NONHSAT120789
12	lnc-SUMF2-5	chr7:56742544-56742773	NONHSAT120781
13	lnc-SUMF2-5	chr7:56742545-56742773	XLOC_006112
14	lnc-SUMF2-5	chr7:56742545-56742767	NONHSAT120787
15	lnc-SUMF2-5	chr7:56736207-56736339	NONHSAT120781
16	lnc-SUMF2-5	chr7:56736818-56737225	XLOC_006112
17	lnc-SUMF2-5	chr7:56735908-56735944	NONHSAT120781
18	lnc-SUMF2-5	chr7:56736818-56737225	XLOC_006112
19	lnc-SUMF2-5	chr7:56735909-56735944	XLOC_006112

No data

Variant related genes	Relation type
NAV3	miRNA target sites
CNGB1	miRNA target sites
ETF1	miRNA target sites
CMTM4	miRNA target sites

Extended variants
information (count: 619 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:619 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11773101	chr7:56734410-56734411	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs578148060	chr7:56734446-56734447	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs538643570	chr7:56734453-56734454	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs114168962	chr7:56734499-56734500	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs557175800	chr7:56734500-56734501	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs150249625	chr7:56734503-56734504	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs73347592	chr7:56734516-56734517	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs561598597	chr7:56734541-56734542	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs184667651	chr7:56734545-56734546	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs540961316	chr7:56734562-56734563	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs375092821	chr7:56734608-56734609	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs371450185	chr7:56734631-56734632	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs564865170	chr7:56734647-56734648	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs532192377	chr7:56734652-56734653	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs550648618	chr7:56734700-56734701	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs139228316	chr7:56734703-56734704	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs189133161	chr7:56734713-56734714	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs118144544	chr7:56734720-56734721	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs181534004	chr7:56734742-56734743	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs566688382	chr7:56734746-56734747	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs1828787	chr7:56734753-56734754	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs573001514	chr7:56734773-56734774	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs184083389	chr7:56734811-56734812	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs1828786	chr7:56734812-56734813	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs113649394	chr7:56734821-56734822	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs111447381	chr7:56734851-56734852	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs118010986	chr7:56734867-56734868	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs536781229	chr7:56734894-56734895	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs2200734	chr7:56734943-56734944	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs545454640	chr7:56734981-56734982	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs554847436	chr7:56734987-56734988	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs147535496	chr7:56735015-56735016	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs1825940	chr7:56735016-56735017	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs201769555	chr7:56735023-56735024	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs1825939	chr7:56735030-56735031	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs188570415	chr7:56735035-56735036	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs543882842	chr7:56735054-56735055	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs4147473	chr7:56735108-56735109	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs181655356	chr7:56735113-56735114	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs541945488	chr7:56735117-56735118	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs1387072	chr7:56735128-56735129	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
42	rs527484460	chr7:56735170-56735171	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs140342508	chr7:56735175-56735176	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs149248122	chr7:56735189-56735190	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs544181510	chr7:56735191-56735192	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs564432485	chr7:56735213-56735214	Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs185943833	chr7:56735220-56735221	Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs550677631	chr7:56735236-56735237	Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs569267657	chr7:56735239-56735240	Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs191058211	chr7:56735250-56735251	Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Wilms tumour	21544195	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Biliary cancer	19435499	CNVD
Cancer	21183584	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
Lung cancer	18438408	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21364760	CNVD
Esophageal cancer	21851588	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Intracranial ependymoma	16609018	CNVD
Lung cancer	21911935	CNVD
Urothelial cell carcinoma	18451213	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	19455253	CNVD
Lung cancer	17925434	CNVD
Glioma	24330732	CNVD
Lung adenocarcinoma	23938291	CNVD
Glioma	17634744	CNVD
Oral squamous cell carcinoma	19276369	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Lung cancer	20031968	CNVD
Glioblastoma	17090523	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Glioma	17123091	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Medullary thyroid carcinoma	18765511	CNVD
small cell lung cancer	20016488	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:56734400-56736400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
2	chr7:56735200-56735600	Active TSS	Fetal Heart	heart
3	chr7:56736600-56736800	ZNF genes & repeats	Pancreas	Pancrea
4	chr7:56736800-56740200	Weak transcription	Pancreas	Pancrea
5	chr7:56752000-56756400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:56752400-56754200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:56752600-56754400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
8	chr7:56753000-56754400	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr7:56753400-56755600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
10	chr7:56753600-56754200	ZNF genes & repeats	Liver	Liver
11	chr7:56755200-56755600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
12	chr7:56761000-56761400	ZNF genes & repeats	Dnd41	blood
13	chr7:56761400-56761600	Flanking Active TSS	Dnd41	blood
14	chr7:56761600-56762200	Enhancers	Dnd41	blood
15	chr7:56761600-56762400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
16	chr7:56762200-56763200	Weak transcription	Dnd41	blood
17	chr7:56763800-56765400	Enhancers	Dnd41	blood
18	chr7:56771600-56772000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

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