Variant report

Variant	nsv575937
Chromosome Location	chr17:67304447-67327806
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:542)
CpG islands
(count:1101)
Chromatin interactive
region (count:38)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:542 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr17:67323241-67323542	K562	blood:	n/a	n/a
2	ARID3A	chr17:67322697-67323979	HepG2	liver:	n/a	n/a
3	ARID3A	chr17:67321620-67322452	HepG2	liver:	n/a	n/a
4	ATF2	chr17:67322488-67322894	GM12878	blood:	n/a	n/a
5	ATF2	chr17:67323046-67323721	GM12878	blood:	n/a	n/a
6	ATF2	chr17:67323419-67323789	GM12878	blood:	n/a	n/a
7	ATF2	chr17:67322489-67322857	GM12878	blood:	n/a	n/a
8	ATF3	chr17:67323190-67323530	K562	blood:	n/a	chr17:67323279-67323288
9	BACH1	chr17:67316422-67316714	H1-hESC	embryonic stem cell:	n/a	n/a
10	BACH1	chr17:67322638-67323936	H1-hESC	embryonic stem cell:	n/a	n/a
11	BCL11A	chr17:67322553-67322862	GM12878	blood:	n/a	chr17:67322643-67322652
12	BCLAF1	chr17:67322918-67323803	GM12878	blood:	n/a	chr17:67323163-67323176 chr17:67323162-67323171 chr17:67323165-67323174 chr17:67323501-67323514
13	BHLHE40	chr17:67322618-67323966	HepG2	liver:	n/a	chr17:67323165-67323181 chr17:67323340-67323356
14	BHLHE40	chr17:67322545-67322873	GM12878	blood:	n/a	n/a
15	BHLHE40	chr17:67319090-67319226	A549	lung:	n/a	n/a
16	BHLHE40	chr17:67323071-67323737	K562	blood:	n/a	chr17:67323165-67323181 chr17:67323340-67323356
17	BHLHE40	chr17:67323162-67323370	A549	lung:	n/a	chr17:67323165-67323181 chr17:67323340-67323356
18	BHLHE40	chr17:67323089-67324241	GM12878	blood:	n/a	chr17:67323165-67323181 chr17:67323340-67323356
19	BRCA1	chr17:67323553-67323665	GM12878	blood:	n/a	n/a
20	BRCA1	chr17:67323040-67323180	HepG2	liver:	n/a	n/a
21	BRCA1	chr17:67323615-67323626	HepG2	liver:	n/a	n/a
22	CBX3	chr17:67323039-67323756	K562	blood:	n/a	n/a
23	CCNT2	chr17:67322875-67323592	K562	blood:	n/a	chr17:67322919-67322928
24	CEBPB	chr17:67319762-67320033	Hela-S3	cervix:	n/a	chr17:67319873-67319885
25	CEBPB	chr17:67304909-67304998	A549	lung:	n/a	chr17:67304945-67304956 chr17:67304945-67304958 chr17:67304947-67304958 chr17:67304945-67304958
26	CEBPB	chr17:67304856-67305068	HepG2	liver:	n/a	chr17:67304945-67304956 chr17:67304945-67304958 chr17:67304947-67304958 chr17:67304945-67304958
27	CEBPB	chr17:67323202-67323542	Hela-S3	cervix:	n/a	n/a
28	CEBPB	chr17:67323258-67323441	H1-hESC	embryonic stem cell:	n/a	n/a
29	CEBPD	chr17:67323323-67323640	HepG2	liver:	n/a	n/a
30	CEBPD	chr17:67323350-67323781	HepG2	liver:	n/a	n/a
31	CHD1	chr17:67322667-67323769	GM12878	blood:	n/a	chr17:67323485-67323495
32	CHD1	chr17:67321986-67322175	GM12878	blood:	n/a	n/a
33	CHD2	chr17:67322564-67323971	Hela-S3	cervix:	n/a	chr17:67323485-67323495
34	CHD2	chr17:67322473-67323800	GM12878	blood:	n/a	chr17:67323485-67323495
35	CHD2	chr17:67322701-67322806	H1-hESC	embryonic stem cell:	n/a	n/a
36	CHD2	chr17:67323218-67323884	H1-hESC	embryonic stem cell:	n/a	chr17:67323485-67323495
37	CHD2	chr17:67322591-67323867	HepG2	liver:	n/a	chr17:67323485-67323495
38	CREB1	chr17:67322717-67323979	A549	lung:	n/a	n/a
39	CTBP2	chr17:67322866-67323972	H1-hESC	embryonic stem cell:	n/a	n/a
40	CTCF	chr17:67323800-67323950	GM12872	blood:	n/a	n/a
41	CTCF	chr17:67323880-67324030	GM12872	blood:	n/a	n/a
42	CTCF	chr17:67323420-67323570	SK-N-SH_RA	brain:	n/a	n/a
43	CTCF	chr17:67323700-67323850	HepG2	liver:	n/a	n/a
44	CTCF	chr17:67323880-67324030	AG04450	lung:	n/a	n/a
45	CTCF	chr17:67323700-67323850	GM12864	blood:	n/a	n/a
46	CTCF	chr17:67323780-67323930	GM12875	blood:	n/a	n/a
47	CTCF	chr17:67322580-67322730	MCF-7	breast:	n/a	n/a
48	CTCF	chr17:67323310-67323459	Spleen_OC	spleen:	n/a	chr17:67323360-67323373
49	CTCF	chr17:67323540-67323690	SK-N-SH_RA	brain:	n/a	n/a
50	CTCF	chr17:67323880-67324030	GM12873	blood:	n/a	n/a

(count:1101 , 50 per page) page: 1 2 3 4 5 6 7 ... 23

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr17:67312371-67312421	HIPEpiC	eye:	n/a
2	chr17:67322833-67322883	MCF-7	breast:	n/a
3	chr17:67323276-67323326	GM12878	blood:	n/a
4	chr17:67312371-67312421	HIPEpiC	eye:	n/a
5	chr17:67322833-67322883	MCF-7	breast:	n/a
6	chr17:67323276-67323326	GM12878	blood:	n/a
7	chr17:67323501-67323551	HPAEpiC	pulmonary alveolar:	n/a
8	chr17:67323922-67323972	ProgFib	skin:	n/a
9	chr17:67323501-67323551	HRCEpiC	kidney:	n/a
10	chr17:67322737-67322787	NT2-D1	testis:	n/a
11	chr17:67322525-67322575	Jurkat	blood:	n/a
12	chr17:67326602-67326652	ovcar-3	ovarian:	n/a
13	chr17:67323501-67323551	HEEpiC	esophagus:	n/a
14	chr17:67323276-67323326	SK-N-SH_RA	brain:	n/a
15	chr17:67312052-67312102	AG09309	skin:	n/a
16	chr17:67313131-67313181	HepG2	liver:	n/a
17	chr17:67312371-67312421	U87	brain:	n/a
18	chr17:67311918-67311968	GM19239	blood:	n/a
19	chr17:67312371-67312421	AG04449	skin:	fetal
20	chr17:67312052-67312102	HCPEpiC	choroid plexus:	n/a
21	chr17:67323284-67323334	HCM	heart:	n/a
22	chr17:67310842-67310892	HCPEpiC	choroid plexus:	n/a
23	chr17:67310842-67310892	HAEpiC	amniotic membrane:	n/a
24	chr17:67323953-67324003	HCT-116	colon:	n/a
25	chr17:67319224-67319274	AG04450	lung:	fetal
26	chr17:67323709-67323759	PrEC	prostate:	n/a
27	chr17:67311918-67311968	BJ	skin:	n/a
28	chr17:67323501-67323551	RPTEC	kidney:	n/a
29	chr17:67323953-67324003	RPTEC	kidney:	n/a
30	chr17:67312052-67312102	GM12878	blood:	n/a
31	chr17:67323501-67323551	GM12891	blood:	n/a
32	chr17:67323922-67323972	T-47D	breast:	n/a
33	chr17:67323284-67323334	A549	lung:	n/a
34	chr17:67322525-67322575	GM12891	blood:	n/a
35	chr17:67323709-67323759	NHDF-neo	bronchial:	n/a
36	chr17:67326602-67326652	PANC-1	pancreas:	n/a
37	chr17:67323501-67323551	PrEC	prostate:	n/a
38	chr17:67310842-67310892	HCT-116	colon:	n/a
39	chr17:67310842-67310892	NHBE	bronchial:	n/a
40	chr17:67322525-67322575	SK-N-SH_RA	brain:	n/a
41	chr17:67323276-67323326	HRE	kidney:	n/a
42	chr17:67311918-67311968	HCPEpiC	choroid plexus:	n/a
43	chr17:67323953-67324003	BJ	skin:	n/a
44	chr17:67322833-67322883	HPAEpiC	pulmonary alveolar:	n/a
45	chr17:67310842-67310892	MCF-7	breast:	n/a
46	chr17:67322525-67322575	H1-hESC	embryonic stem cell:	embryo
47	chr17:67323768-67323818	HL-60	blood:	n/a
48	chr17:67326602-67326652	PFSK-1	brain:	n/a
49	chr17:67319224-67319274	HIPEpiC	eye:	n/a
50	chr17:67322525-67322575	BE2_C	brain:	n/a

(count:38 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:67306645..67309454-chr17:67315201..67317494,2	MCF-7	breast:
2	chr17:67319063..67338122-chr17:73766152..73783684,87	MCF-7	breast:
3	chr17:67315824..67317637-chr17:73759992..73762328,2	MCF-7	breast:
4	chr17:67325454..67338838-chr17:73810118..73818942,31	MCF-7	breast:
5	chr17:67310195..67312056-chr17:67315862..67318011,2	MCF-7	breast:
6	chr17:67312349..67314720-chr17:67316616..67318624,2	MCF-7	breast:
7	chr17:67302832..67306346-chr17:67321797..67325175,5	MCF-7	breast:
8	chr17:67302738..67306142-chr17:67312679..67315678,3	MCF-7	breast:
9	chr17:67323272..67324897-chr17:73808118..73810953,2	MCF-7	breast:
10	chr17:67322761..67325274-chr17:73781239..73785058,4	MCF-7	breast:
11	chr17:67309727..67311288-chr17:73775195..73776995,2	MCF-7	breast:
12	chr17:67302832..67306346-chr17:67321797..67325175,5	MCF-7	breast:
13	chr17:67320335..67330619-chr17:73766697..73778324,31	MCF-7	breast:
14	chr17:67307415..67308999-chr17:67312227..67313741,2	MCF-7	breast:
15	chr17:67323371..67325282-chr17:73779557..73781105,2	MCF-7	breast:
16	chr17:67306645..67309454-chr17:67315201..67317494,2	MCF-7	breast:
17	chr17:67312349..67314720-chr17:67316616..67318624,2	MCF-7	breast:
18	chr17:67323424..67325863-chr17:68604112..68606610,2	MCF-7	breast:
19	chr15:40213124..40213699-chr17:67323085..67323765,2	Hela-S3	cervix:
20	chr17:65987873..65991052-chr17:67322121..67324983,3	MCF-7	breast:
21	chr1:155162793..155163414-chr17:67323501..67324001,2	Hela-S3	cervix:
22	chr17:67319568..67321227-chr17:67322205..67324296,2	K562	blood:
23	chr17:67323434..67325106-chr17:67412103..67414795,2	MCF-7	breast:
24	chr17:67307812..67310320-chr17:67310542..67312902,2	MCF-7	breast:
25	chr17:67327538..67330079-chr17:73803754..73806052,2	MCF-7	breast:
26	chr17:67321198..67325432-chr17:73812405..73817349,6	MCF-7	breast:
27	chr17:67322138..67324719-chr17:73807664..73810547,2	MCF-7	breast:
28	chr17:67314877..67316596-chr17:73774432..73776155,2	MCF-7	breast:
29	chr17:66312138..66314512-chr17:67323585..67325244,2	MCF-7	breast:
30	chr17:65989640..65991330-chr17:67322601..67324607,2	MCF-7	breast:
31	chr17:67313140..67316033-chr17:67326236..67328234,2	MCF-7	breast:
32	chr17:67302738..67306142-chr17:67312679..67315678,3	MCF-7	breast:
33	chr17:67305293..67307123-chr17:67307147..67309014,2	MCF-7	breast:
34	chr12:113622549..113624896-chr17:67326315..67328769,2	MCF-7	breast:
35	chr17:67307415..67308999-chr17:67312227..67313741,2	MCF-7	breast:
36	chr17:67321326..67323057-chr17:73804111..73806636,2	MCF-7	breast:
37	chr17:67323799..67326723-chr17:73814347..73817369,3	MCF-7	breast:
38	chr17:67304720..67306221-chr20:56847823..56849619,2	MCF-7	breast:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ABCA10-4	chr17:67313846-67313964	NONHSAT055577
2	lnc-ABCA10-4	chr17:67313041-67313373	NONHSAT055577
3	lnc-ABCA10-4	chr17:67323193-67323252	NONHSAT055577
4	lnc-ABCA10-4	chr17:67321840-67321958	NONHSAT055577
5	lnc-MAP2K6-7	chr17:67314874-67315102	NONHSAT055578

No data

Variant related genes	Relation type
ABCA5	TF binding region
SNRPGP4	TF binding region
ABCA5	CpG island
SNRPGP4	CpG island
ENSG00000263565	chromatin interactions
ENSG00000266980	chromatin interactions
ENSG00000124224	chromatin interactions
ENSG00000267203	chromatin interactions
ENSG00000139405	chromatin interactions
ENSG00000108479	chromatin interactions
ENSG00000123064	chromatin interactions
ENSG00000132478	chromatin interactions
ENSG00000246863	chromatin interactions
ENSG00000132475	chromatin interactions
ENSG00000154265	chromatin interactions
ENSG00000186665	chromatin interactions

Extended variants
information (count: 855 )
Associated
traits (count: 100 )

Variant overlapped rSNPs/rCNVs (count:855 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11544715	chr17:67304447-67304448	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs146823111	chr17:67304498-67304499	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs201093486	chr17:67304503-67304504	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs375659632	chr17:67304512-67304513	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs376636503	chr17:67304514-67304515	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs568846058	chr17:67304563-67304564	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs371957244	chr17:67304590-67304591	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs557305426	chr17:67304636-67304637	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs520389	chr17:67304661-67304662	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs546275307	chr17:67304670-67304671	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs564934893	chr17:67304677-67304678	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs577071205	chr17:67304694-67304695	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs541354704	chr17:67304725-67304726	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs559660196	chr17:67304740-67304741	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs529994560	chr17:67304769-67304770	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
16	rs541495468	chr17:67304827-67304828	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
17	rs563289832	chr17:67304894-67304895	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
18	rs530569671	chr17:67304914-67304915	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
19	rs62080891	chr17:67305021-67305022	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
20	rs551209289	chr17:67305038-67305039	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
21	rs570721726	chr17:67305039-67305040	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
22	rs528632509	chr17:67305043-67305044	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
23	rs34985085	chr17:67305181-67305182	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs146854005	chr17:67305199-67305200	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
25	rs533644634	chr17:67305224-67305225	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
26	rs536134487	chr17:67305247-67305248	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
27	rs557122814	chr17:67305297-67305298	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
28	rs11871086	chr17:67305364-67305365	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs373883392	chr17:67305366-67305367	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
30	rs181980775	chr17:67305371-67305372	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
31	rs367763619	chr17:67305423-67305424	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
32	rs140656112	chr17:67305439-67305440	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
33	rs567168335	chr17:67305453-67305454	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
34	rs371330830	chr17:67305462-67305463	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
35	rs184289333	chr17:67305488-67305489	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
36	rs376806604	chr17:67305501-67305502	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
37	rs145838528	chr17:67305503-67305504	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
38	rs369806150	chr17:67305504-67305505	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
39	rs199888749	chr17:67305519-67305520	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
40	rs75899488	chr17:67305523-67305524	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
41	rs202125570	chr17:67305530-67305531	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
42	rs574826423	chr17:67305542-67305543	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
43	rs372064747	chr17:67305545-67305546	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
44	rs201346812	chr17:67305547-67305548	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
45	rs201742068	chr17:67305569-67305570	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
46	rs372884952	chr17:67305577-67305578	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
47	rs140645535	chr17:67305578-67305579	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
48	rs376095034	chr17:67305583-67305584	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
49	rs200550938	chr17:67305588-67305589	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
50	rs188808373	chr17:67305609-67305610	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:100)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Ovarian cancer	22174824	CNVD
Melanoma	18172304	CNVD
Moyamoya disease	22323933	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ovarian cancer	21781307	CNVD
Colorectal cancer	21645411	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Medulloblastoma	21979893	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Chordoma	21602918	CNVD
Neurofibromatosis	20686819	CNVD
Peripheral nerve sheath tumors	20686819	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Cancer	21499728	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	17897457	CNVD
Neuroblastoma	17327916	CNVD
Breast cancer	21264507	CNVD
Endometrial cancer	22040021	CNVD
Neuroblastoma	21484798	CNVD
Breast cancer	22028636	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute myeloid leukemia	20724749	CNVD
lymphocytic leukemia	21291569	CNVD
Gastric cancer	17167181	CNVD
Breast cancer	19287154	CNVD
Leukemia	20874852	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Neuroblastoma	18664255	CNVD
Neuroblastoma	17533364	CNVD
Human rectal carcinomas	16397240	CNVD
Metanephric adenoma	20802469	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Neuroblastoma	18923191	CNVD
Bladder cancer	21909424	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Ewing''s sarcoma	18628472	CNVD
Glioblastoma multiforme	18628472	CNVD
Leukemia	18628472	CNVD
Ewing''s sarcoma	22429812	CNVD
Prostate cancer	18632612	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Breast cancer	21509527	CNVD
Chordoma	18071362	CNVD
Cancer	16751803	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	21523713	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Breast cancer	21364760	CNVD
Breast cancer	16397240	CNVD
Breast cancer	17603634	CNVD
Urothelial carcinoma	18382360	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	16608533	CNVD
Breast cancer	21858162	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Congenital Hypertrichosis Syndrome	21636067	CNVD
Cancer	21129771	CNVD
Congenital generalized hypertrichosis terminalis	19463983	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Gingival hyperplasia	19463983	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Neuroblastoma	20406844	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16417655	CNVD
Breast cancer	21045282	CNVD
Sezary syndrome	18413736	CNVD
Honadal dysgenesis	21408189	CNVD
Basal cell lymphoma	17053054	CNVD
Acute monocytic leukemia	16498392	CNVD

Chromatin state (count:807 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67243600-67305600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr17:67244000-67321800	Weak transcription	Right Ventricle	heart
3	chr17:67261400-67322000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr17:67266200-67310400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr17:67270200-67307400	Weak transcription	Colonic Mucosa	Colon
6	chr17:67272400-67306400	Weak transcription	Primary B cells from peripheral blood	blood
7	chr17:67276400-67310600	Weak transcription	Brain Substantia Nigra	brain
8	chr17:67276600-67308800	Weak transcription	Aorta	Aorta
9	chr17:67279400-67308000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr17:67279600-67306400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr17:67280000-67307200	Weak transcription	Fetal Thymus	thymus
12	chr17:67283600-67304800	Weak transcription	NHDF-Ad	bronchial
13	chr17:67283800-67312800	Weak transcription	HMEC	breast
14	chr17:67284000-67312800	Weak transcription	NHEK	skin
15	chr17:67284600-67309200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr17:67285000-67316200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr17:67289600-67307000	Weak transcription	Spleen	Spleen
18	chr17:67289600-67307600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr17:67289600-67310400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr17:67289800-67310400	Weak transcription	Brain Anterior Caudate	brain
21	chr17:67289800-67310800	Weak transcription	Colon Smooth Muscle	Colon
22	chr17:67289800-67312800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr17:67290000-67305800	Weak transcription	Thymus	Thymus
24	chr17:67290000-67306200	Weak transcription	Primary T cells from cord blood	blood
25	chr17:67290000-67308200	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr17:67290000-67310600	Weak transcription	Brain Angular Gyrus	brain
27	chr17:67290000-67311000	Weak transcription	Primary hematopoietic stem cells	blood
28	chr17:67290000-67311000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr17:67290000-67317400	Weak transcription	Gastric	stomach
30	chr17:67290200-67306800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr17:67290200-67308000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr17:67290200-67319600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr17:67290400-67305600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr17:67290600-67305200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr17:67290600-67305600	Weak transcription	Pancreas	Pancrea
36	chr17:67290600-67305600	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr17:67290600-67309200	Weak transcription	Lung	lung
38	chr17:67290600-67312800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr17:67291000-67305400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr17:67291800-67305600	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr17:67291800-67309400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr17:67291800-67313800	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr17:67291800-67321800	Weak transcription	Esophagus	oesophagus
44	chr17:67293200-67315600	Weak transcription	GM12878-XiMat	blood
45	chr17:67294000-67310600	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr17:67294200-67305600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr17:67295800-67307600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr17:67296600-67310600	Weak transcription	Ovary	ovary
49	chr17:67296800-67305000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr17:67296800-67305400	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links