Variant report

Variant	nsv578982
Chromosome Location	chr19:23124244-23167970
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF99-2	chr19:23128467-23128510	XLOC_013271

Extended variants
information (count: 765 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:765 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs370551716	chr19:23126611-23126612	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs79895079	chr19:23126672-23126673	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs553527773	chr19:23126710-23126711	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs200667108	chr19:23126718-23126719	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs548241133	chr19:23126730-23126731	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs566644454	chr19:23126738-23126739	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs527815930	chr19:23126746-23126747	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs76683720	chr19:23126747-23126748	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs148138834	chr19:23126753-23126754	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs369583197	chr19:23126797-23126798	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs571399534	chr19:23126853-23126854	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs181957574	chr19:23126876-23126877	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs115928292	chr19:23126906-23126907	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs116294451	chr19:23126920-23126921	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs555347895	chr19:23126929-23126930	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs141912267	chr19:23126940-23126941	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs373627653	chr19:23126981-23126982	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs575197426	chr19:23126986-23126987	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs572958058	chr19:23127045-23127046	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs539991927	chr19:23127092-23127093	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs559102183	chr19:23127096-23127097	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs146093745	chr19:23127104-23127105	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs140051457	chr19:23127105-23127106	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs184546488	chr19:23127119-23127120	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs189069096	chr19:23127132-23127133	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs180814652	chr19:23127208-23127209	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs560156596	chr19:23127241-23127242	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs10420255	chr19:23127259-23127260	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs552394030	chr19:23127260-23127261	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs571382668	chr19:23127274-23127275	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs185828262	chr19:23127330-23127331	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs190200791	chr19:23127333-23127334	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs73023698	chr19:23127357-23127358	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs536581871	chr19:23127376-23127377	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs181743240	chr19:23127388-23127389	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs452404	chr19:23127435-23127436	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs558377494	chr19:23127436-23127437	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs185898127	chr19:23127446-23127447	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs374517188	chr19:23127458-23127459	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs146292004	chr19:23127474-23127475	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs73551553	chr19:23127479-23127480	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs565755906	chr19:23127487-23127488	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs574783187	chr19:23127531-23127532	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs191070801	chr19:23127532-23127533	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs578172506	chr19:23127552-23127553	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs540857702	chr19:23127554-23127555	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs560634139	chr19:23127571-23127572	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs557145979	chr19:23127580-23127581	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs379562	chr19:23127615-23127616	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs183699757	chr19:23127635-23127636	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:23126600-23130000	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:23127400-23129600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr19:23128000-23129800	ZNF genes & repeats	Liver	Liver
4	chr19:23128000-23130600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:23128000-23130600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr19:23128400-23128800	Active TSS	Fetal Heart	heart
7	chr19:23129400-23130000	Active TSS	Right Atrium	heart
8	chr19:23132400-23133000	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr19:23132400-23133200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
10	chr19:23153400-23153800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
11	chr19:23153800-23154800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr19:23154000-23155400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
13	chr19:23154800-23155600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
14	chr19:23155400-23156200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr19:23155600-23156400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr19:23156200-23157000	ZNF genes & repeats	Aorta	Aorta
17	chr19:23156200-23159400	ZNF genes & repeats	Left Ventricle	heart
18	chr19:23156200-23162000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr19:23156200-23164600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
20	chr19:23156400-23159600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
21	chr19:23157000-23158000	Weak transcription	Aorta	Aorta
22	chr19:23157000-23162200	ZNF genes & repeats	Adipose Nuclei	Adipose
23	chr19:23157600-23160000	ZNF genes & repeats	Brain Hippocampus Middle	brain
24	chr19:23157600-23161600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
25	chr19:23157600-23161800	ZNF genes & repeats	Liver	Liver
26	chr19:23157600-23162000	ZNF genes & repeats	Colon Smooth Muscle	Colon
27	chr19:23157800-23160600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
28	chr19:23158000-23159400	ZNF genes & repeats	Aorta	Aorta
29	chr19:23158000-23159400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
30	chr19:23158000-23159800	ZNF genes & repeats	Brain Substantia Nigra	brain
31	chr19:23158000-23161800	ZNF genes & repeats	Brain Anterior Caudate	brain
32	chr19:23158600-23159600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
33	chr19:23158600-23159600	ZNF genes & repeats	Right Ventricle	heart
34	chr19:23158600-23159800	ZNF genes & repeats	Ovary	ovary
35	chr19:23158600-23160400	ZNF genes & repeats	Fetal Heart	heart
36	chr19:23158600-23162000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
37	chr19:23158800-23159600	ZNF genes & repeats	Stomach Smooth Muscle	stomach
38	chr19:23158800-23160400	ZNF genes & repeats	Rectal Smooth Muscle	rectum
39	chr19:23159400-23160200	Weak transcription	Left Ventricle	heart
40	chr19:23159400-23161200	Weak transcription	Aorta	Aorta
41	chr19:23159600-23161200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr19:23160200-23160400	ZNF genes & repeats	Left Ventricle	heart
43	chr19:23160400-23161200	Weak transcription	Left Ventricle	heart
44	chr19:23161200-23161400	ZNF genes & repeats	Brain Hippocampus Middle	brain
45	chr19:23161200-23161400	ZNF genes & repeats	Rectal Smooth Muscle	rectum
46	chr19:23161200-23161600	ZNF genes & repeats	Aorta	Aorta
47	chr19:23161200-23162000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
48	chr19:23161200-23162000	ZNF genes & repeats	Left Ventricle	heart
49	chr19:23161200-23162000	ZNF genes & repeats	Ovary	ovary
50	chr19:23161200-23162000	ZNF genes & repeats	Right Ventricle	heart

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