Variant report

Variant	nsv579103
Chromosome Location	chr19:24468847-24569587
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7910 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:7910 , 50 per page) page: 1 2 3 4 5 6 7 ... 159

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2434834	chr19:24468847-24468848	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs535932549	chr19:24468867-24468868	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs143101737	chr19:24468881-24468882	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs192132560	chr19:24468904-24468905	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs147505597	chr19:24468924-24468925	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs398120912	chr19:24468933-24468934	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs201922542	chr19:24468934-24468935	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs540068741	chr19:24468936-24468937	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs565150150	chr19:24468956-24468957	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs148078603	chr19:24468964-24468965	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs117172989	chr19:24468971-24468972	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs546496829	chr19:24468994-24468995	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs563543782	chr19:24469009-24469010	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs530969476	chr19:24469022-24469023	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs549496892	chr19:24469023-24469024	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs561397362	chr19:24469042-24469043	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs376590989	chr19:24469044-24469045	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs182762626	chr19:24469050-24469051	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs141827632	chr19:24469054-24469055	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs571863892	chr19:24469064-24469065	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs560109463	chr19:24469124-24469125	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs56232173	chr19:24469133-24469134	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs559155388	chr19:24469142-24469143	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs538973378	chr19:24469172-24469173	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs541866799	chr19:24469229-24469230	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs372305098	chr19:24469233-24469234	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs568755361	chr19:24469240-24469241	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs562165723	chr19:24469255-24469256	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs187842977	chr19:24469271-24469272	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs554226769	chr19:24469288-24469289	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs572616019	chr19:24469302-24469303	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs11881898	chr19:24469323-24469324	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs201545940	chr19:24469341-24469342	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs558479302	chr19:24469349-24469350	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs577028439	chr19:24469366-24469367	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs550703946	chr19:24469386-24469387	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs79831542	chr19:24469388-24469389	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs562850414	chr19:24469405-24469406	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs575688122	chr19:24469414-24469415	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs563924139	chr19:24469442-24469443	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs532989625	chr19:24469462-24469463	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs2694466	chr19:24469490-24469491	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs189422780	chr19:24469521-24469522	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs540780209	chr19:24469532-24469533	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs565327060	chr19:24469555-24469556	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs532786899	chr19:24469566-24469567	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs192801804	chr19:24469568-24469569	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs569243523	chr19:24469572-24469573	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs73017203	chr19:24469575-24469576	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs546463841	chr19:24469579-24469580	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Autism	19287141	CNVD
Lung cancer	18438408	CNVD

Chromatin state (count:215 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:24468000-24473400	ZNF genes & repeats	Liver	Liver
2	chr19:24468400-24496800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
3	chr19:24468600-24477400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr19:24469200-24504400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr19:24472000-24475000	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr19:24472800-24473200	Active TSS	Aorta	Aorta
7	chr19:24473200-24474200	Weak transcription	Aorta	Aorta
8	chr19:24474000-24474800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
9	chr19:24474200-24474400	ZNF genes & repeats	Brain Substantia Nigra	brain
10	chr19:24474200-24474400	ZNF genes & repeats	Dnd41	blood
11	chr19:24474200-24474400	ZNF genes & repeats	Osteobl	bone
12	chr19:24474200-24474600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
13	chr19:24474200-24474600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
14	chr19:24474200-24474800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
15	chr19:24474200-24474800	ZNF genes & repeats	Primary T cells from cord blood	blood
16	chr19:24474200-24474800	Active TSS	Aorta	Aorta
17	chr19:24474200-24474800	ZNF genes & repeats	NH-A	brain
18	chr19:24474200-24475000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
19	chr19:24474400-24474800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr19:24474600-24474800	ZNF genes & repeats	HepG2	liver
21	chr19:24474600-24474800	ZNF genes & repeats	HUVEC	blood vessel
22	chr19:24474600-24474800	ZNF genes & repeats	K562	blood
23	chr19:24475000-24475600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr19:24475600-24504400	ZNF genes & repeats	Liver	Liver
25	chr19:24478600-24484600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr19:24480000-24493400	ZNF genes & repeats	Adipose Nuclei	Adipose
27	chr19:24480800-24481400	Active TSS	Aorta	Aorta
28	chr19:24481600-24494000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
29	chr19:24484400-24485000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr19:24484800-24486000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
31	chr19:24486400-24487200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
32	chr19:24486400-24490800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
33	chr19:24491800-24492400	Active TSS	Aorta	Aorta
34	chr19:24495600-24497600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
35	chr19:24499000-24502200	ZNF genes & repeats	Adipose Nuclei	Adipose
36	chr19:24499200-24502000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
37	chr19:24500800-24501200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr19:24503800-24512000	ZNF genes & repeats	Adipose Nuclei	Adipose
39	chr19:24505400-24505800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
40	chr19:24507800-24577200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr19:24508000-24573400	ZNF genes & repeats	Liver	Liver
42	chr19:24508800-24569000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr19:24509200-24570800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
44	chr19:24509400-24510200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
45	chr19:24513000-24571800	ZNF genes & repeats	Adipose Nuclei	Adipose
46	chr19:24513400-24527000	ZNF genes & repeats	Dnd41	blood
47	chr19:24513600-24530800	ZNF genes & repeats	Psoas Muscle	Psoas
48	chr19:24513800-24518200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
49	chr19:24514400-24519400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
50	chr19:24515400-24516200	Active TSS	Right Atrium	heart

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