Variant report

Variant	nsv579109
Chromosome Location	chr19:24574031-24614321
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2714 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:2714 , 50 per page) page: 1 2 3 4 5 6 7 ... 55

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7339690	chr19:24574031-24574032	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs559867634	chr19:24574052-24574053	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs528679988	chr19:24574073-24574074	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs201691911	chr19:24574074-24574075	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs78140831	chr19:24574087-24574088	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs200382108	chr19:24574107-24574108	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs75915858	chr19:24574108-24574109	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs548822319	chr19:24574111-24574112	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs77981150	chr19:24574112-24574113	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs547092623	chr19:24574115-24574116	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs200377417	chr19:24574129-24574130	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs192983980	chr19:24574134-24574135	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs201288972	chr19:24574141-24574142	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs112249200	chr19:24574150-24574151	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs200798002	chr19:24574157-24574158	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs370399198	chr19:24574171-24574172	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs112710627	chr19:24574217-24574218	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs201726353	chr19:24574227-24574228	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs184324676	chr19:24574228-24574229	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs367792068	chr19:24574230-24574231	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs371318681	chr19:24574232-24574233	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs565740475	chr19:24574243-24574244	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs539548328	chr19:24574249-24574250	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs8189983	chr19:24574261-24574262	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs569911627	chr19:24574280-24574281	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs200511144	chr19:24574283-24574284	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs537319957	chr19:24574284-24574285	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs555666768	chr19:24574293-24574294	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs201866895	chr19:24574302-24574303	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs200001592	chr19:24574333-24574334	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs185601769	chr19:24574346-24574347	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs374508050	chr19:24574362-24574363	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs201215821	chr19:24574371-24574372	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs535810650	chr19:24574376-24574377	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs553885651	chr19:24574387-24574388	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs367800046	chr19:24574412-24574413	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs201644086	chr19:24574415-24574416	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs572169414	chr19:24574417-24574418	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs375007866	chr19:24574418-24574419	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs62135720	chr19:24574420-24574421	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs79122896	chr19:24574425-24574426	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs370316269	chr19:24574437-24574438	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs545936311	chr19:24574440-24574441	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs188652894	chr19:24574441-24574442	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs76542028	chr19:24574451-24574452	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs564339985	chr19:24574461-24574462	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs576258300	chr19:24574472-24574473	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs4986241	chr19:24574473-24574474	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs543744337	chr19:24574483-24574484	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs562372827	chr19:24574486-24574487	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Autism	19287141	CNVD
Lung cancer	18438408	CNVD

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:24507800-24577200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr19:24522000-24576600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr19:24525400-24577200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chr19:24573200-24574600	Weak transcription	Aorta	Aorta
5	chr19:24574400-24576200	ZNF genes & repeats	Dnd41	blood
6	chr19:24574600-24575800	Active TSS	Aorta	Aorta
7	chr19:24577400-24577600	ZNF genes & repeats	Aorta	Aorta
8	chr19:24577600-24578000	Weak transcription	Aorta	Aorta
9	chr19:24582600-24583200	Active TSS	Aorta	Aorta
10	chr19:24582800-24588600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
11	chr19:24583000-24588600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
12	chr19:24583200-24588600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
13	chr19:24583400-24585000	ZNF genes & repeats	Fetal Heart	heart
14	chr19:24583400-24588600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr19:24583800-24585800	ZNF genes & repeats	HUVEC	blood vessel
16	chr19:24584400-24588400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
17	chr19:24585000-24585200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr19:24586000-24586800	Weak transcription	HUVEC	blood vessel
19	chr19:24586400-24588200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr19:24586600-24587200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
21	chr19:24586600-24588200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr19:24586600-24588400	ZNF genes & repeats	Psoas Muscle	Psoas
23	chr19:24586800-24587000	ZNF genes & repeats	NH-A	brain
24	chr19:24586800-24587200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr19:24586800-24588600	ZNF genes & repeats	Liver	Liver
26	chr19:24586800-24588600	ZNF genes & repeats	HUVEC	blood vessel
27	chr19:24587600-24588400	Active TSS	Aorta	Aorta
28	chr19:24587600-24588400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
29	chr19:24587800-24588200	ZNF genes & repeats	Adipose Nuclei	Adipose
30	chr19:24587800-24588400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
31	chr19:24588200-24588400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr19:24588600-24589000	Weak transcription	HUVEC	blood vessel
33	chr19:24593200-24594200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr19:24593600-24593800	Enhancers	Pancreatic Islets	Pancreatic Islet
35	chr19:24593600-24596400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr19:24593800-24594200	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr19:24593800-24594400	ZNF genes & repeats	Fetal Heart	heart
38	chr19:24594000-24594400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr19:24594000-24594600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
40	chr19:24594000-24597000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
41	chr19:24594200-24594400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
42	chr19:24594200-24594400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr19:24594200-24594400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
44	chr19:24594200-24594400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
45	chr19:24594200-24594400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr19:24594200-24594400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
47	chr19:24594200-24594400	Flanking Bivalent TSS/Enh	Primary T killer memory cells from peripheral blood	blood
48	chr19:24594200-24594400	ZNF genes & repeats	Brain Hippocampus Middle	brain
49	chr19:24594200-24594400	ZNF genes & repeats	Colonic Mucosa	Colon
50	chr19:24594200-24594400	ZNF genes & repeats	Colon Smooth Muscle	Colon

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