Variant report

Variant	nsv579113
Chromosome Location	chr19:24601680-24623298
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 891 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:891 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs62134503	chr19:24601680-24601681	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs200966754	chr19:24601690-24601691	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs112568228	chr19:24601696-24601697	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs375800780	chr19:24601704-24601705	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs368339414	chr19:24601712-24601713	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs563274195	chr19:24601713-24601714	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs113081918	chr19:24601721-24601722	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs372274396	chr19:24601723-24601724	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs55890426	chr19:24601725-24601726	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs376865787	chr19:24601727-24601728	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs112691024	chr19:24601728-24601729	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs369035849	chr19:24601746-24601747	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs372865408	chr19:24601756-24601757	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs147895570	chr19:24601759-24601760	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs62134504	chr19:24601769-24601770	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs62134505	chr19:24601775-24601776	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs34082806	chr19:24601783-24601784	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs62134506	chr19:24601785-24601786	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs2675862	chr19:24601799-24601800	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs112459992	chr19:24601805-24601806	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs561145940	chr19:24601811-24601812	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs528347789	chr19:24601816-24601817	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs368924625	chr19:24601819-24601820	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs201934293	chr19:24601823-24601824	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs147792381	chr19:24601825-24601826	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs143471540	chr19:24601830-24601831	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs369542230	chr19:24601832-24601833	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs533398501	chr19:24601833-24601834	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs71246788	chr19:24601838-24601839	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs199866532	chr19:24601841-24601842	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs142015169	chr19:24601852-24601853	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs112059619	chr19:24601869-24601870	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs140020846	chr19:24601875-24601876	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs551828034	chr19:24601880-24601881	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs570098884	chr19:24601882-24601883	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs142714251	chr19:24601885-24601886	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs537644779	chr19:24601890-24601891	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs549273685	chr19:24601898-24601899	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs567524922	chr19:24601900-24601901	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs534959477	chr19:24601903-24601904	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs553268122	chr19:24601921-24601922	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs565371044	chr19:24601934-24601935	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs8187088	chr19:24601935-24601936	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs201899147	chr19:24601940-24601941	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs143306400	chr19:24601942-24601943	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs557008346	chr19:24601957-24601958	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs575207632	chr19:24601968-24601969	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs373771183	chr19:24601987-24601988	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs560890949	chr19:24602000-24602001	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs573088264	chr19:24602004-24602005	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Autism	19287141	CNVD
Lung cancer	18438408	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:24594200-24603400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr19:24595800-24602400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
3	chr19:24597600-24603400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chr19:24598200-24602800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr19:24601600-24608400	Weak transcription	NH-A	brain
6	chr19:24602000-24603400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
7	chr19:24615200-24617400	Weak transcription	NH-A	brain
8	chr19:24617400-24617800	ZNF genes & repeats	NH-A	brain
9	chr19:24617800-24619000	Weak transcription	NH-A	brain

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