Variant report
| Variant | nsv579480 |
|---|---|
| Chromosome Location | chr19:38342512-38344145 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:5)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr19:38322269..38323772-chr19:38341605..38343235,2 | K562 | blood: |
(count:5 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ZNF573-1 | chr19:38343930-38344165 | ENSG00000225868.2 |
| 2 | lnc-ZNF573-1 | chr19:38343930-38344187 | ENSG00000225868.2 |
| 3 | lnc-ZNF573-1 | chr19:38343642-38343761 | ENSG00000225868.2 |
| 4 | lnc-ZNF573-1 | chr19:38343642-38343761 | ENSG00000225868.2 |
| 5 | lnc-ZNF573-1 | chr19:38343642-38343761 | ENSG00000225868.2 |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs376912641 | chr19:38343686-38343687 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 2 | rs559874999 | chr19:38343745-38343746 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 3 | rs534022305 | chr19:38343761-38343762 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 4 | rs557202209 | chr19:38343943-38343944 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 5 | rs575563206 | chr19:38343977-38343978 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 6 | rs546165853 | chr19:38344053-38344054 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 7 | rs565136801 | chr19:38344087-38344088 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 8 | rs564060363 | chr19:38344128-38344129 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:58)
| Disease | PMID | Source |
|---|---|---|
| Myelodysplastic syndrome | 17634407 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Cancer | 21637783 | CNVD |
| Retinoblastoma | 21504564 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Ovarian cancer | 21720365 | CNVD |
| Cancer | 20164919 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Autism | 22495311 | CNVD |
| Adenoid cystic carcinoma | 18698036 | CNVD |
| Ductal carcinoma | 22052326 | CNVD |
| Pleomorphic liposarcoma | 18784837 | CNVD |
| Congenital nephrotic syndrome | 18421352 | CNVD |
| Astrocytoma | 17934521 | CNVD |
| Leukemia | 17361228 | CNVD |
| Adenoid cystic carcinoma | 17372589 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Glioma | 21971842 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Oligodendroglial tumors | 17285580 | CNVD |
| renal disease | 20603712 | CNVD |
| Salivary gland adenoid cystic carcinoma | 17545515 | CNVD |
| Disorders of sex development | 21048976 | CNVD |
| Ovarian cancer | 22174824 | CNVD |
| Breast cancer | 16608533 | CNVD |
| Neuroblastoma | 18923191 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Invasive pancreatic ductal carcinoma | 18765526 | CNVD |
| Rhabdomyosarcoma | 16790082 | CNVD |
| Chordoma | 18071362 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Mental retardation | 19951919 | CNVD |
| 19q13.11 deletion syndrome | 22378287 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Breast cancer | 21045282 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Ovarian neoplasms | 16753589 | CNVD |
| Malignant fibrous histiocytomas | 21085701 | CNVD |
| Metanephric adenoma | 20802469 | CNVD |
| Acute myeloid leukemia | 16864856 | CNVD |
| Lung cancer | 21569311 | CNVD |
| Bladder cancer | 21909424 | CNVD |
| Medulloblastoma | 16783165 | CNVD |
| Breast cancer | 22522925 | CNVD |
| Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Chromatin state (count:0 , 50 per page) page:
| No data |
