Variant report

Variant	nsv579518
Chromosome Location	chr19:40385437-40387356
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 62 )

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs371253690	chr19:40385558-40385559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs376157679	chr19:40385580-40385581	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs566039137	chr19:40385583-40385584	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs536508721	chr19:40385620-40385621	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs554186263	chr19:40385933-40385934	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs571799399	chr19:40385962-40385963	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs2569774	chr19:40385982-40385983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs180711439	chr19:40385989-40385990	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs113088710	chr19:40385993-40385994	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs536778078	chr19:40385999-40386000	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs75726648	chr19:40386039-40386040	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs80291781	chr19:40386040-40386041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs145867116	chr19:40386097-40386098	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs138485873	chr19:40386098-40386099	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs553163082	chr19:40386303-40386304	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs574824444	chr19:40386305-40386306	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs113117839	chr19:40386321-40386322	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs542140524	chr19:40386503-40386504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs561295659	chr19:40386597-40386598	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs531717040	chr19:40386696-40386697	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs56138831	chr19:40386719-40386720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs565400968	chr19:40386721-40386722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs75082872	chr19:40386850-40386851	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs538907111	chr19:40386901-40386902	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs111516359	chr19:40386904-40386905	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs113095487	chr19:40386949-40386950	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs547980592	chr19:40387025-40387026	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs200664245	chr19:40387168-40387169	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs2082491	chr19:40387288-40387289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs565927905	chr19:40387308-40387309	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs2019307	chr19:40387356-40387357	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:62)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	21858162	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21364760	CNVD
Invasive pancreatic ductal carcinoma	18765526	CNVD
Rhabdomyosarcoma	16790082	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
small cell lung cancer	20016488	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Ovarian neoplasms	16753589	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Lung cancer	21569311	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Gastric cancer	18160780	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	19029149	CNVD
Breast cancer	20409316	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Renal cell carcinoma	18765545	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Genital abnormality	22378287	CNVD
Hypospadia	22378287	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Astrocytoma	22246337	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40369800-40402600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr19:40369800-40404000	Weak transcription	Colonic Mucosa	Colon
3	chr19:40371200-40402800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr19:40371200-40404000	Weak transcription	Primary T cells from cord blood	blood
5	chr19:40371400-40391000	Weak transcription	Fetal Intestine Small	intestine

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