Variant report
Variant | nsv580353 |
---|---|
Chromosome Location | chr19:56502995-56537528 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:129)
- CpG islands (count:305)
- Chromatin interactive region (count:2)
- LncRNA region (count:7)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | CEBPB | chr19:56527810-56527996 | A549 | lung: | n/a | chr19:56527886-56527897 chr19:56527850-56527861 |
2 | CEBPB | chr19:56527867-56528017 | K562 | blood: | n/a | chr19:56527886-56527897 |
3 | CEBPB | chr19:56527761-56527969 | Hela-S3 | cervix: | n/a | chr19:56527886-56527897 chr19:56527850-56527861 |
4 | CEBPB | chr19:56527760-56528021 | HepG2 | liver: | n/a | chr19:56527886-56527897 chr19:56527850-56527861 |
5 | CTCF | chr19:56531964-56532032 | Kidney_OC | kidney: | n/a | n/a |
6 | CTCF | chr19:56537300-56537450 | WI-38 | lung: | n/a | n/a |
7 | CTCF | chr19:56520034-56520087 | Kidney_OC | kidney: | n/a | n/a |
8 | CTCF | chr19:56504857-56504894 | Pancreas_OC | pancreas: | n/a | n/a |
9 | CTCF | chr19:56530979-56531030 | Medullo | brain: | n/a | n/a |
10 | GABPA | chr19:56504804-56504951 | HepG2 | liver: | n/a | n/a |
11 | GABPA | chr19:56504811-56504948 | HepG2 | liver: | n/a | n/a |
12 | MAFF | chr19:56526189-56526488 | HepG2 | liver: | n/a | chr19:56526320-56526338 |
13 | MAFK | chr19:56526158-56526495 | HepG2 | liver: | n/a | chr19:56526322-56526337 |
14 | MAFK | chr19:56526211-56526460 | IMR90 | lung: | n/a | chr19:56526322-56526337 |
15 | MAFK | chr19:56526176-56526464 | HepG2 | liver: | n/a | chr19:56526322-56526337 |
16 | MAX | chr19:56527210-56527384 | NB4 | blood: | n/a | n/a |
17 | MYC | chr19:56512508-56512616 | GM12878 | blood: | n/a | n/a |
18 | POLR2A | chr19:56523701-56523812 | GM12878 | blood: | n/a | n/a |
19 | POLR2A | chr19:56535979-56536076 | A549 | lung: | n/a | n/a |
20 | POLR2A | chr19:56516986-56517065 | MCF-7 | breast: | n/a | n/a |
21 | POLR2A | chr19:56521363-56521455 | GM12878 | blood: | n/a | n/a |
22 | POLR2A | chr19:56511550-56511580 | ProgFib | skin: | n/a | n/a |
23 | POLR2A | chr19:56510304-56510306 | MCF10A-Er-Src | breast: | n/a | n/a |
24 | PRDM1 | chr19:56527061-56527443 | Hela-S3 | cervix: | n/a | chr19:56527250-56527265 |
25 | REST | chr19:56527190-56527379 | GM12878 | blood: | n/a | n/a |
26 | REST | chr19:56531639-56532092 | U87 | brain: | n/a | chr19:56531951-56531971 chr19:56531951-56531971 chr19:56531951-56531971 chr19:56531951-56531965 chr19:56531957-56531966 chr19:56531952-56531970 |
27 | REST | chr19:56532176-56532295 | SK-N-SH | brain: | n/a | n/a |
28 | REST | chr19:56531820-56531964 | K562 | blood: | n/a | n/a |
29 | REST | chr19:56531391-56531786 | PFSK-1 | brain: | n/a | n/a |
30 | REST | chr19:56530353-56530569 | Hela-S3 | cervix: | n/a | n/a |
31 | REST | chr19:56526759-56527713 | HL-60 | blood: | n/a | n/a |
32 | REST | chr19:56526784-56527580 | HL-60 | blood: | n/a | n/a |
33 | REST | chr19:56530712-56531055 | PFSK-1 | brain: | n/a | chr19:56530924-56530933 chr19:56530918-56530938 chr19:56530918-56530938 chr19:56530918-56530938 chr19:56530919-56530937 chr19:56530918-56530932 |
34 | REST | chr19:56531798-56531983 | PFSK-1 | brain: | n/a | chr19:56531951-56531971 chr19:56531951-56531971 chr19:56531951-56531971 chr19:56531951-56531965 chr19:56531957-56531966 chr19:56531952-56531970 |
35 | REST | chr19:56527136-56527514 | K562 | blood: | n/a | n/a |
36 | REST | chr19:56531641-56532174 | U87 | brain: | n/a | chr19:56531951-56531971 chr19:56531951-56531971 chr19:56531951-56531971 chr19:56531951-56531965 chr19:56531957-56531966 chr19:56531952-56531970 |
37 | REST | chr19:56531418-56531798 | PANC-1 | pancreas: | n/a | n/a |
38 | REST | chr19:56526916-56527549 | K562 | blood: | n/a | n/a |
39 | REST | chr19:56530659-56531107 | U87 | brain: | n/a | chr19:56530924-56530933 chr19:56530918-56530938 chr19:56530918-56530938 chr19:56530918-56530938 chr19:56530919-56530937 chr19:56530918-56530932 |
40 | REST | chr19:56527144-56527434 | HepG2 | liver: | n/a | n/a |
41 | REST | chr19:56531762-56532067 | SK-N-SH | brain: | n/a | chr19:56531951-56531971 chr19:56531951-56531971 chr19:56531951-56531971 chr19:56531951-56531965 chr19:56531957-56531966 chr19:56531952-56531970 |
42 | REST | chr19:56531811-56532062 | HepG2 | liver: | n/a | chr19:56531951-56531971 chr19:56531951-56531971 chr19:56531951-56531971 chr19:56531951-56531965 chr19:56531957-56531966 chr19:56531952-56531970 |
43 | REST | chr19:56527146-56527464 | H1-hESC | embryonic stem cell: | n/a | n/a |
44 | REST | chr19:56530774-56531071 | Hela-S3 | cervix: | n/a | chr19:56530924-56530933 chr19:56530918-56530938 chr19:56530918-56530938 chr19:56530918-56530938 chr19:56530919-56530937 chr19:56530918-56530932 |
45 | REST | chr19:56526772-56527633 | PFSK-1 | brain: | n/a | n/a |
46 | REST | chr19:56527168-56527451 | U87 | brain: | n/a | n/a |
47 | REST | chr19:56531598-56532213 | HepG2 | liver: | n/a | chr19:56531951-56531971 chr19:56531951-56531971 chr19:56531951-56531971 chr19:56531951-56531965 chr19:56531957-56531966 chr19:56531952-56531970 |
48 | REST | chr19:56527161-56527405 | HepG2 | liver: | n/a | n/a |
49 | REST | chr19:56530678-56531072 | HepG2 | liver: | n/a | chr19:56530924-56530933 chr19:56530918-56530938 chr19:56530918-56530938 chr19:56530918-56530938 chr19:56530919-56530937 chr19:56530918-56530932 |
50 | REST | chr19:56530801-56530932 | K562 | blood: | n/a | chr19:56530918-56530932 |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr19:56510965-56511015 | T-47D | breast: | n/a |
2 | chr19:56510965-56511015 | HL-60 | blood: | n/a |
3 | chr19:56510200-56510250 | SK-N-SH_RA | brain: | n/a |
4 | chr19:56510892-56510942 | NT2-D1 | testis: | n/a |
5 | chr19:56510892-56510942 | GM12892 | blood: | n/a |
6 | chr19:56510833-56510883 | HCT-116 | colon: | n/a |
7 | chr19:56510965-56511015 | PFSK-1 | brain: | n/a |
8 | chr19:56510200-56510250 | LNCaP | prostate: | n/a |
9 | chr19:56510200-56510250 | GM06990 | blood: | n/a |
10 | chr19:56510833-56510883 | PrEC | prostate: | n/a |
11 | chr19:56510892-56510942 | K562 | blood: | n/a |
12 | chr19:56511149-56511199 | SAEC | small airway: | n/a |
13 | chr19:56510892-56510942 | ProgFib | skin: | n/a |
14 | chr19:56510833-56510883 | LNCaP | prostate: | n/a |
15 | chr19:56510833-56510883 | GM12878 | blood: | n/a |
16 | chr19:56510200-56510250 | AG04450 | lung: | fetal |
17 | chr19:56510892-56510942 | Hepatocyte | liver: | n/a |
18 | chr19:56510965-56511015 | HIPEpiC | eye: | n/a |
19 | chr19:56510200-56510250 | HCM | heart: | n/a |
20 | chr19:56510892-56510942 | GM06990 | blood: | n/a |
21 | chr19:56510892-56510942 | AG10803 | skin: | n/a |
22 | chr19:56511149-56511199 | HCT-116 | colon: | n/a |
23 | chr19:56510833-56510883 | PANC-1 | pancreas: | n/a |
24 | chr19:56510200-56510250 | Jurkat | blood: | n/a |
25 | chr19:56510965-56511015 | HCT-116 | colon: | n/a |
26 | chr19:56510833-56510883 | Hepatocyte | liver: | n/a |
27 | chr19:56510833-56510883 | HRE | kidney: | n/a |
28 | chr19:56510965-56511015 | Hela-S3 | cervix: | n/a |
29 | chr19:56510200-56510250 | HEEpiC | esophagus: | n/a |
30 | chr19:56510965-56511015 | SAEC | small airway: | n/a |
31 | chr19:56510833-56510883 | T-47D | breast: | n/a |
32 | chr19:56511149-56511199 | HMEC | breast: | n/a |
33 | chr19:56510833-56510883 | SK-N-MC | brain: | n/a |
34 | chr19:56510892-56510942 | HIPEpiC | eye: | n/a |
35 | chr19:56510833-56510883 | BE2_C | brain: | n/a |
36 | chr19:56511149-56511199 | GM12891 | blood: | n/a |
37 | chr19:56510892-56510942 | Jurkat | blood: | n/a |
38 | chr19:56510200-56510250 | HCF | heart: | n/a |
39 | chr19:56510892-56510942 | NB4 | blood: | n/a |
40 | chr19:56510892-56510942 | AG09319 | gingival: | n/a |
41 | chr19:56510892-56510942 | HAEpiC | amniotic membrane: | n/a |
42 | chr19:56510200-56510250 | A549 | lung: | n/a |
43 | chr19:56511149-56511199 | MCF-7 | breast: | n/a |
44 | chr19:56511149-56511199 | PFSK-1 | brain: | n/a |
45 | chr19:56510200-56510250 | HCPEpiC | choroid plexus: | n/a |
46 | chr19:56510965-56511015 | PANC-1 | pancreas: | n/a |
47 | chr19:56510965-56511015 | GM12878 | blood: | n/a |
48 | chr19:56510892-56510942 | NH-A | brain: | n/a |
49 | chr19:56510200-56510250 | H1-hESC | embryonic stem cell: | embryo |
50 | chr19:56510833-56510883 | HUVEC | blood vessel: | n/a |
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-ZNF787-1 | chr19:56529257-56529370 | ucscGeneNc_uc002pwe_1 |
2 | lnc-ZNF787-1 | chr19:56533954-56534208 | ucscGeneNc_uc002pwe_1 |
3 | lnc-ZNF787-1 | chr19:56528857-56529011 | ucscGeneNc_uc002pwe_1 |
4 | lnc-ZNF787-1 | chr19:56532996-56533274 | ucscGeneNc_uc002pwe_1 |
5 | lnc-ZNF787-1 | chr19:56526602-56527706 | ucscGeneNc_uc002pwe_1 |
6 | lnc-ZNF787-1 | chr19:56532304-56532600 | ucscGeneNc_uc002pwe_1 |
7 | lnc-ZNF787-1 | chr19:56535081-56535219 | ucscGeneNc_uc002pwe_1 |
No data |
No data |
Variant related genes | Relation type |
---|---|
NLRP5 | TF binding region |
NLRP5 | CpG island |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs147697670 | chr19:56504620-56504621 | Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs142317196 | chr19:56504649-56504650 | Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs534236125 | chr19:56504656-56504657 | Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs306444 | chr19:56504670-56504671 | Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs372231204 | chr19:56504729-56504730 | Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs539940703 | chr19:56504777-56504778 | Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs556652660 | chr19:56504778-56504779 | Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs575548909 | chr19:56504788-56504789 | Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs544416652 | chr19:56504789-56504790 | Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs189351212 | chr19:56504819-56504820 | Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Enhancers | n/a | n/a | Overlapped CNVs | n/a |
11 | rs113501803 | chr19:56504854-56504855 | Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Enhancers | n/a | n/a | Overlapped CNVs | n/a |
12 | rs111398069 | chr19:56504881-56504882 | Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Enhancers | n/a | n/a | Overlapped CNVs | n/a |
13 | rs572989379 | chr19:56504883-56504884 | Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Enhancers | n/a | n/a | Overlapped CNVs | n/a |
14 | rs201829003 | chr19:56504892-56504893 | Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Enhancers | n/a | n/a | Overlapped CNVs | n/a |
15 | rs544913311 | chr19:56504895-56504896 | Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Enhancers | n/a | n/a | Overlapped CNVs | n/a |
16 | rs368818166 | chr19:56504946-56504947 | Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Enhancers | n/a | n/a | Overlapped CNVs | n/a |
17 | rs554875448 | chr19:56504948-56504949 | Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Enhancers | n/a | n/a | Overlapped CNVs | n/a |
18 | rs574629190 | chr19:56504952-56504953 | Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Enhancers | n/a | n/a | Overlapped CNVs | n/a |
19 | rs540485815 | chr19:56504954-56504955 | Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Enhancers | n/a | n/a | Overlapped CNVs | n/a |
20 | rs546230665 | chr19:56504980-56504981 | Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Enhancers | n/a | n/a | Overlapped CNVs | n/a |
21 | rs150514413 | chr19:56504985-56504986 | Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Enhancers | n/a | n/a | Overlapped CNVs | n/a |
22 | rs73615450 | chr19:56504991-56504992 | Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Enhancers | n/a | n/a | Overlapped CNVs | n/a |
23 | rs73615451 | chr19:56505038-56505039 | ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs531940900 | chr19:56505044-56505045 | ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs569815642 | chr19:56505089-56505090 | ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs545535553 | chr19:56505107-56505108 | ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs200318926 | chr19:56505147-56505148 | ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs386811143 | chr19:56505148-56505149 | ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs201735724 | chr19:56505149-56505150 | ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs199647383 | chr19:56505150-56505151 | ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs386811144 | chr19:56505153-56505154 | ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs114174043 | chr19:56505154-56505155 | ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs550966156 | chr19:56505160-56505161 | ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs548481635 | chr19:56505184-56505185 | ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs568608911 | chr19:56505203-56505204 | ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs117214885 | chr19:56505208-56505209 | ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs549122946 | chr19:56505220-56505221 | ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs370833298 | chr19:56505227-56505228 | ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs548019554 | chr19:56505269-56505270 | ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs570865114 | chr19:56505282-56505283 | ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs146356048 | chr19:56505289-56505290 | ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs145729966 | chr19:56505339-56505340 | ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs556740362 | chr19:56505344-56505345 | ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs386811145 | chr19:56505345-56505346 | ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs184266045 | chr19:56505377-56505378 | ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs144986188 | chr19:56505379-56505380 | ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs200779218 | chr19:56505419-56505420 | ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs113709940 | chr19:56505428-56505429 | ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs189619910 | chr19:56505490-56505491 | ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs574546799 | chr19:56505502-56505503 | ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Myelodysplastic syndrome | 17634407 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Chordoma | 21602918 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Cancer | 21637783 | CNVD |
Retinoblastoma | 21504564 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Ovarian cancer | 21720365 | CNVD |
Cancer | 20164919 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Prostate cancer | 18632612 | CNVD |
Ductal carcinoma | 22052326 | CNVD |
Congenital nephrotic syndrome | 18421352 | CNVD |
Astrocytoma | 17934521 | CNVD |
Leukemia | 17361228 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Breast cancer | 17603634 | CNVD |
Glioma | 21971842 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 21264507 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
renal disease | 20603712 | CNVD |
Adenoid cystic carcinoma | 18698036 | CNVD |
Salivary gland adenoid cystic carcinoma | 17545515 | CNVD |
Breast cancer | 16608533 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Chordoma | 18071362 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Bladder cancer | 21909424 | CNVD |
Medulloblastoma | 16783165 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Multiple myeloma | 16616336 | CNVD |
Acute lymphoblastic leukemia | 21339820 | CNVD |
Wilms tumour | 21544195 | CNVD |
low-grade B-cell lymphoma tumor | 18367492 | CNVD |
Congenital anomalies of the kidney and urinary tract | 18852474 | CNVD |
Glioblastoma multiforme | 17002787 | CNVD |
Cervical cancer | 21062161 | CNVD |
Primary central nervous system lymphoma | 21088137 | CNVD |
Prostate cancer | 16573809 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Lung cancer | 18438408 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Ovarian cancer | 21781307 | CNVD |
Neuroblastoma | 20406844 | CNVD |
Breast cancer | 21785460 | CNVD |
Myelofibrosis | 22110671 | CNVD |
T-cell acute lymphoblastic leukemia | 19406988 | CNVD |
Alzheimer''s disease | 22166940 | CNVD |
Heart disease | 21282601 | CNVD |
Diffuse large b-cell lymphoma | 18287131 | CNVD |
Glioblastoma multiforme | 21922591 | CNVD |
Non-syndromic sensorineural hearing loss | 18496225 | CNVD |
Basal cell lymphoma | 19029149 | CNVD |
Diffuse large b-cell lymphoma | 19029149 | CNVD |
Breast cancer | 20409316 | CNVD |
Breast cancer | 22522925 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Melanoma | 20877625 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr19:56504600-56504800 | Active TSS | HSMM | muscle |
2 | chr19:56504600-56504800 | Weak transcription | HSMMtube | muscle |
3 | chr19:56504600-56505000 | Bivalent/Poised TSS | ES-I3 Cell Line | embryonic stem cell |
4 | chr19:56504600-56505000 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
5 | chr19:56504600-56505000 | ZNF genes & repeats | NHEK | skin |
6 | chr19:56504800-56505000 | Enhancers | HSMMtube | muscle |
7 | chr19:56504800-56505200 | Flanking Active TSS | HSMM | muscle |
8 | chr19:56504800-56505600 | ZNF genes & repeats | iPS-18 Cell Line | embryonic stem cell |
9 | chr19:56504800-56505600 | Active TSS | GM12878-XiMat | blood |
10 | chr19:56505000-56505800 | Weak transcription | HSMMtube | muscle |
11 | chr19:56519000-56519400 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
12 | chr19:56521200-56521600 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
13 | chr19:56521400-56521600 | Bivalent/Poised TSS | Hela-S3 | cervix |