Variant report

Variant	nsv580385
Chromosome Location	chr19:56918598-57072433
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:642)
CpG islands
(count:2381)
Chromatin interactive
region (count:19)
LncRNA
region (count:55)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

(count:642 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF3	chr19:56988997-56989631	H1-hESC	embryonic stem cell:	n/a	n/a
2	BACH1	chr19:56988129-56989735	H1-hESC	embryonic stem cell:	n/a	n/a
3	BACH1	chr19:57002772-57003159	H1-hESC	embryonic stem cell:	n/a	n/a
4	BACH1	chr19:57018807-57019161	H1-hESC	embryonic stem cell:	n/a	n/a
5	BACH1	chr19:57050354-57050813	H1-hESC	embryonic stem cell:	n/a	n/a
6	BATF	chr19:57006008-57006182	GM12878	blood:	n/a	n/a
7	BATF	chr19:57005926-57006227	GM12878	blood:	n/a	n/a
8	BCL11A	chr19:57005946-57006300	GM12878	blood:	n/a	n/a
9	BHLHE40	chr19:56989421-56989451	K562	blood:	n/a	n/a
10	BHLHE40	chr19:57050358-57050446	GM12878	blood:	n/a	n/a
11	BRCA1	chr19:57050604-57050791	H1-hESC	embryonic stem cell:	n/a	n/a
12	BRCA1	chr19:57009690-57009818	H1-hESC	embryonic stem cell:	n/a	n/a
13	BRCA1	chr19:57018909-57019098	H1-hESC	embryonic stem cell:	n/a	n/a
14	CBX3	chr19:56934943-56935689	K562	blood:	n/a	n/a
15	CBX3	chr19:56934598-56934867	K562	blood:	n/a	n/a
16	CEBPB	chr19:57055191-57055492	K562	blood:	n/a	chr19:57055337-57055348
17	CEBPB	chr19:56935273-56935539	A549	lung:	n/a	chr19:56935376-56935387
18	CEBPB	chr19:56954711-56954807	HepG2	liver:	n/a	chr19:56954765-56954776
19	CEBPB	chr19:57018866-57019252	IMR90	lung:	n/a	n/a
20	CEBPB	chr19:56954673-56954866	A549	lung:	n/a	chr19:56954765-56954776
21	CEBPB	chr19:56989289-56990099	IMR90	lung:	n/a	chr19:56989652-56989661 chr19:56989652-56989661 chr19:56989652-56989661
22	CEBPB	chr19:57055143-57055580	A549	lung:	n/a	chr19:57055337-57055348
23	CEBPB	chr19:56967750-56967840	HepG2	liver:	n/a	chr19:56967822-56967833
24	CEBPB	chr19:57055148-57055531	A549	lung:	n/a	chr19:57055337-57055348
25	CEBPB	chr19:56967674-56967892	A549	lung:	n/a	chr19:56967822-56967833
26	CEBPB	chr19:56935297-56935563	K562	blood:	n/a	chr19:56935376-56935387
27	CEBPB	chr19:56989489-56989808	HepG2	liver:	n/a	chr19:56989652-56989661 chr19:56989652-56989661 chr19:56989652-56989661
28	CEBPB	chr19:56989368-56989798	H1-hESC	embryonic stem cell:	n/a	chr19:56989652-56989661 chr19:56989652-56989661 chr19:56989652-56989661
29	CEBPB	chr19:57055151-57055530	IMR90	lung:	n/a	chr19:57055337-57055348
30	CEBPB	chr19:56935314-56935541	HepG2	liver:	n/a	chr19:56935376-56935387
31	CEBPB	chr19:57055126-57055622	A549	lung:	n/a	chr19:57055337-57055348
32	CEBPB	chr19:57034299-57034494	A549	lung:	n/a	chr19:57034405-57034416
33	CEBPB	chr19:56954724-56954779	H1-hESC	embryonic stem cell:	n/a	chr19:56954765-56954776
34	CEBPB	chr19:56989481-56989788	A549	lung:	n/a	chr19:56989652-56989661 chr19:56989652-56989661 chr19:56989652-56989661
35	CEBPB	chr19:57034280-57034480	HepG2	liver:	n/a	chr19:57034405-57034416
36	CEBPB	chr19:56989477-56989808	K562	blood:	n/a	chr19:56989652-56989661 chr19:56989652-56989661 chr19:56989652-56989661
37	CEBPB	chr19:57019023-57019246	H1-hESC	embryonic stem cell:	n/a	n/a
38	CEBPB	chr19:57055211-57055572	MCF-7	breast:	n/a	chr19:57055337-57055348
39	CEBPB	chr19:56980070-56980184	HepG2	liver:	n/a	chr19:56980115-56980126
40	CEBPB	chr19:57002828-57003033	IMR90	lung:	n/a	chr19:57002892-57002904
41	CEBPB	chr19:57055163-57055521	HepG2	liver:	n/a	chr19:57055337-57055348
42	CEBPB	chr19:57055209-57055487	H1-hESC	embryonic stem cell:	n/a	chr19:57055337-57055348
43	CHD1	chr19:57050277-57050612	H1-hESC	embryonic stem cell:	n/a	n/a
44	CHD1	chr19:56989564-56989769	H1-hESC	embryonic stem cell:	n/a	n/a
45	CHD2	chr19:56988838-56989767	H1-hESC	embryonic stem cell:	n/a	n/a
46	CHD2	chr19:57049739-57050064	H1-hESC	embryonic stem cell:	n/a	n/a
47	CHD2	chr19:57050629-57050805	H1-hESC	embryonic stem cell:	n/a	n/a
48	CHD2	chr19:57018785-57019737	H1-hESC	embryonic stem cell:	n/a	n/a
49	CREB1	chr19:57049532-57050520	A549	lung:	n/a	n/a
50	CREB1	chr19:57049612-57050035	ECC-1	luminal epithelium:	n/a	n/a

(count:2381 , 50 per page) page: 1 2 3 4 5 6 7 ... 48

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:57018848-57018898	MCF10A-Er-Src	breast:	n/a
2	chr19:57049695-57049745	HRPEpiC	eye:	n/a
3	chr19:57018848-57018898	MCF10A-Er-Src	breast:	n/a
4	chr19:57049695-57049745	HRPEpiC	eye:	n/a
5	chr19:56989740-56989790	NHDF-neo	bronchial:	n/a
6	chr19:57050359-57050409	HEK293	kidney:	embryo
7	chr19:56988813-56988863	SK-N-MC	brain:	n/a
8	chr19:56988702-56988752	MCF10A-Er-Src	breast:	n/a
9	chr19:56988956-56989006	IMR90	lung:	fetal
10	chr19:56988956-56989006	AG09319	gingival:	n/a
11	chr19:56988806-56988856	PrEC	prostate:	n/a
12	chr19:56988806-56988856	HEEpiC	esophagus:	n/a
13	chr19:57049695-57049745	AoSMC	blood vessel:	n/a
14	chr19:56953293-56953343	SAEC	small airway:	n/a
15	chr19:56988935-56988985	HCM	heart:	n/a
16	chr19:57019373-57019423	HCPEpiC	choroid plexus:	n/a
17	chr19:56988205-56988255	SKMC	muscle:	n/a
18	chr19:56988702-56988752	AG04450	lung:	fetal
19	chr19:56988398-56988448	Hela-S3	cervix:	n/a
20	chr19:57049695-57049745	NHDF-neo	bronchial:	n/a
21	chr19:56988935-56988985	Jurkat	blood:	n/a
22	chr19:57050367-57050417	SK-N-SH_RA	brain:	n/a
23	chr19:57050367-57050417	AoSMC	blood vessel:	n/a
24	chr19:57050620-57050670	HRE	kidney:	n/a
25	chr19:57049695-57049745	HRE	kidney:	n/a
26	chr19:56988956-56989006	HRE	kidney:	n/a
27	chr19:57046713-57046763	AG09309	skin:	n/a
28	chr19:56988935-56988985	Hepatocyte	liver:	n/a
29	chr19:57050367-57050417	HRE	kidney:	n/a
30	chr19:56988813-56988863	Jurkat	blood:	n/a
31	chr19:56988806-56988856	IMR90	lung:	fetal
32	chr19:56988956-56989006	GM12891	blood:	n/a
33	chr19:56988702-56988752	SK-N-SH	brain:	n/a
34	chr19:57046713-57046763	HEK293	kidney:	embryo
35	chr19:56989543-56989593	MCF-7	breast:	n/a
36	chr19:57046713-57046763	HCPEpiC	choroid plexus:	n/a
37	chr19:57067420-57067470	Jurkat	blood:	n/a
38	chr19:56989102-56989152	HEK293	kidney:	embryo
39	chr19:57019016-57019066	NT2-D1	testis:	n/a
40	chr19:57019279-57019329	AG04450	lung:	fetal
41	chr19:56988778-56988828	BJ	skin:	n/a
42	chr19:56988806-56988856	PFSK-1	brain:	n/a
43	chr19:57050834-57050884	HEEpiC	esophagus:	n/a
44	chr19:57019958-57020008	HAEpiC	amniotic membrane:	n/a
45	chr19:57049695-57049745	SAEC	small airway:	n/a
46	chr19:56985323-56985373	GM12878	blood:	n/a
47	chr19:56953293-56953343	HCF	heart:	n/a
48	chr19:57018848-57018898	GM12891	blood:	n/a
49	chr19:56989740-56989790	CMK	blood:	n/a
50	chr19:57049530-57049580	NB4	blood:	n/a

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:56913953..56915717-chr19:56929673..56932216,2	K562	blood:
2	chr19:56921777..56924252-chr19:56925183..56927455,2	K562	blood:
3	chr19:56921777..56924252-chr19:56925183..56927455,2	K562	blood:
4	chr19:57002795..57005630-chr19:57006374..57008169,2	MCF-7	breast:
5	chr19:56922748..56925351-chr19:56930754..56933374,2	K562	blood:
6	chr19:56907962..56910475-chr19:56925379..56927319,2	K562	blood:
7	chr19:56978548..56980333-chr19:56983464..56985765,2	K562	blood:
8	chr19:56928898..56932035-chr19:56933505..56936936,3	K562	blood:
9	chr19:57002795..57005630-chr19:57006374..57008169,2	MCF-7	breast:
10	chr19:56936048..56938748-chr19:56941808..56944257,2	K562	blood:
11	chr19:56936048..56938748-chr19:56941808..56944257,2	K562	blood:
12	chr19:56936048..56937864-chr19:56941808..56944058,2	K562	blood:
13	chr19:56914950..56917627-chr19:56917967..56921707,4	K562	blood:
14	chr19:56936048..56937864-chr19:56941808..56944058,2	K562	blood:
15	chr19:56922748..56925351-chr19:56930754..56933374,2	K562	blood:
16	chr19:56653240..56655225-chr19:56994034..56995574,2	K562	blood:
17	chr19:57019659..57020659-chr6:103890104..103890604,2	MCF-7	breast:
18	chr19:56912448..56916998-chr19:56918724..56922155,5	K562	blood:
19	chr19:56915589..56918201-chr19:56921743..56925459,4	K562	blood:

(count:55 , 50 per page) page: 1 2

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC004696.1-1	chr19:57005532-57005688	ENSG00000166770.6
2	lnc-AC004696.1-1	chr19:57002946-57003135	ENSG00000166770.6
3	lnc-AC004696.1-1	chr19:56988619-56990056	ENSG00000166770.6
4	lnc-AC004696.1-1	chr19:57005532-57005696	ENSG00000166770.6
5	lnc-ZFP28-2	chr19:57021466-57021682	NONHSAT068165
6	lnc-AC004696.1-1	chr19:57005532-57005711	ENSG00000166770.6
7	lnc-ZNF667-3	chr19:57047527-57047701	ENSG00000267421.2
8	lnc-ZNF667-2	chr19:57056297-57058640	NONHSAT068173
9	lnc-AC004696.1-1	chr19:57005532-57005711	ENSG00000166770.6
10	lnc-AC004696.1-1	chr19:57005532-57006805	NONHSAT068157
11	lnc-AC004696.1-1	chr19:56989526-56989645	ENSG00000166770.6
12	lnc-AC004696.1-1	chr19:57011463-57012035	ENSG00000166770.6
13	lnc-ZNF471-1	chr19:57050994-57051085	NONHSAT068172
14	lnc-AC004696.1-1	chr19:57006417-57006804	ENSG00000166770.6
15	lnc-ZNF667-3	chr19:57047527-57047701	ENSG00000267421.2
16	lnc-AC004696.1-1	chr19:57006416-57006801	ENSG00000166770.6
17	lnc-ZNF667-2	chr19:57056935-57058640	ENSG00000269696.1
18	lnc-AC004696.1-1	chr19:57008670-57008818	ENSG00000166770.6
19	lnc-ZNF667-3	chr19:57047527-57047701	ENSG00000267421.2
20	lnc-AC004696.1-1	chr19:56989552-56989750	ENSG00000166770.6
21	lnc-AC004696.1-1	chr19:56989609-56989662	ENSG00000166770.6
22	lnc-ZNF667-3	chr19:57047525-57047701	ENSG00000267421.2
23	lnc-AC004696.1-1	chr19:57005532-57005711	ENSG00000166770.6
24	lnc-ZNF667-3	chr19:57049020-57049106	ENSG00000267421.2
25	lnc-ZNF582-2	chr19:56985381-56987270	ENSG00000250660
26	lnc-AC004696.1-1	chr19:57002946-57003135	ENSG00000166770.6
27	lnc-ZNF667-3	chr19:57049020-57049106	ENSG00000267421.2
28	lnc-ZNF667-3	chr19:57049617-57049684	ENSG00000267421.2
29	lnc-ZFP28-1	chr19:57046668-57047132	ENSG00000267224.1
30	lnc-ZNF471-1	chr19:57055905-57056106	NONHSAT068172
31	lnc-AC004696.1-1	chr19:56989243-56989750	NONHSAT068156
32	lnc-ZNF582-2	chr19:56979088-56980304	ENSG00000250660
33	lnc-ZFP28-2	chr19:57037069-57037390	NONHSAT068165
34	lnc-ZNF470-2	chr19:57061815-57062398	NONHSAT068174
35	lnc-AC004696.1-1	chr19:56989552-56989645	ENSG00000166770.6
36	lnc-ZNF471-1	chr19:57050438-57050595	NONHSAT068172
37	lnc-AC004696.1-1	chr19:56989552-56989645	ENSG00000166770.6
38	lnc-AC004696.1-1	chr19:56989500-56989750	ENSG00000166770.6
39	lnc-ZNF667-3	chr19:57049622-57049744	ENSG00000267421.2
40	lnc-ZNF667-2	chr19:57056935-57058640	ENSG00000245443
41	lnc-AC004696.1-1	chr19:56989559-56989746	ENSG00000166770.6
42	lnc-AC004696.1-1	chr19:57005532-57006805	NONHSAT068156
43	lnc-ZNF667-3	chr19:57049017-57049800	ENSG00000267421.2
44	lnc-AC004696.1-1	chr19:56988972-56989294	ENSG00000166770.6
45	lnc-AC004696.1-1	chr19:57006417-57006687	ENSG00000166770.6
46	lnc-ZNF667-3	chr19:57049020-57049106	ENSG00000267421.2
47	lnc-AC004696.1-1	chr19:56989524-56989750	ENSG00000166770.6
48	lnc-AC004696.1-1	chr19:56989493-56989645	NONHSAT068157
49	lnc-ZNF667-3	chr19:57049020-57049106	ENSG00000267421.2
50	lnc-AC004696.1-1	chr19:57005532-57006801	ENSG00000166770.6

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	ZFP28	hsa-miR-335-5p	chr19:57063009-57063035

Variant related genes	Relation type
ENSG00000267421	TF binding region
ZNF667	TF binding region
ZNF471	TF binding region
ZNF583	TF binding region
ENSG00000267224	TF binding region
ZFP28	TF binding region
ZNF667-AS1	TF binding region
ENSG00000267421	CpG island
ZNF667	CpG island
ZNF471	CpG island
ZNF583	CpG island
ENSG00000267224	CpG island
ZFP28	CpG island
ZNF667-AS1	CpG island
ENSG00000198046	chromatin interactions
ENSG00000167685	chromatin interactions
ENSG00000198440	chromatin interactions
TMEM194A	miRNA target sites
IKBIP	miRNA target sites
BRCA1	miRNA target sites
PIR	miRNA target sites
TKT	miRNA target sites
EIF4E	miRNA target sites

Extended variants
information (count: 5632 )
Associated
traits (count: 77 )

Variant overlapped rSNPs/rCNVs (count:5632 , 50 per page) page: 1 2 3 4 5 6 7 ... 113

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2288863	chr19:56918598-56918599	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs556645274	chr19:56918654-56918655	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs4801160	chr19:56918661-56918662	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs536919851	chr19:56918697-56918698	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs371400105	chr19:56918726-56918727	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs113724960	chr19:56918760-56918761	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs140264754	chr19:56918765-56918766	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs373595626	chr19:56918771-56918772	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs191988329	chr19:56918785-56918786	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs559007192	chr19:56918863-56918864	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs386811214	chr19:56918872-56918873	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs115242721	chr19:56918873-56918874	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs145352705	chr19:56918875-56918876	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs564260825	chr19:56918953-56918954	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs374957602	chr19:56918974-56918975	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs193238544	chr19:56919019-56919020	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs137870027	chr19:56919054-56919055	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs184411223	chr19:56919081-56919082	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs116542120	chr19:56919107-56919108	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs368022966	chr19:56919239-56919240	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs571427123	chr19:56919240-56919241	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs112883613	chr19:56919266-56919267	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs550719705	chr19:56919286-56919287	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs189354931	chr19:56919333-56919334	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs191703677	chr19:56919393-56919394	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs553694941	chr19:56919398-56919399	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs115336989	chr19:56919400-56919401	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs183842341	chr19:56919485-56919486	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs558844748	chr19:56919486-56919487	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs74383968	chr19:56919504-56919505	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs563550807	chr19:56919507-56919508	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs188514911	chr19:56919516-56919517	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs377111268	chr19:56919520-56919521	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs371580081	chr19:56919521-56919522	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs554676601	chr19:56919535-56919536	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs7246353	chr19:56919571-56919572	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs540275947	chr19:56919590-56919591	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs116007236	chr19:56919593-56919594	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs528331959	chr19:56919608-56919609	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs557157693	chr19:56919708-56919709	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs549387603	chr19:56919709-56919710	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs564906258	chr19:56919768-56919769	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs530762967	chr19:56919800-56919801	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs181690632	chr19:56919834-56919835	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs561007740	chr19:56919836-56919837	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs559533531	chr19:56919908-56919909	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs73934903	chr19:56919909-56919910	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs546572816	chr19:56919921-56919922	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs13343842	chr19:56919994-56919995	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs554814860	chr19:56920059-56920060	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:77)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Colorectal cancer	16272173	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Breast cancer	21785460	CNVD
Myelofibrosis	22110671	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Alzheimer''s disease	22166940	CNVD
Heart disease	21282601	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Glioblastoma multiforme	21922591	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Breast cancer	20409316	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:3894 , 50 per page) page: 1 2 3 4 5 6 7 ... 78

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:56915800-56924200	ZNF genes & repeats	Fetal Brain Male	brain
2	chr19:56915800-56927000	ZNF genes & repeats	HSMM	muscle
3	chr19:56916000-56938600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr19:56916200-56919000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr19:56916200-56920200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr19:56916400-56918600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr19:56916400-56918600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr19:56916400-56920400	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
9	chr19:56916400-56926200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr19:56916400-56927000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
11	chr19:56916400-56929800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
12	chr19:56916400-56936600	ZNF genes & repeats	Brain Germinal Matrix	brain
13	chr19:56916400-56956000	ZNF genes & repeats	Liver	Liver
14	chr19:56916600-56920000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr19:56916600-56920200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr19:56916600-56935600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr19:56916600-56956000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
18	chr19:56916800-56918600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr19:56916800-56918600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr19:56916800-56918600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr19:56916800-56918600	Weak transcription	Brain Substantia Nigra	brain
22	chr19:56916800-56918600	Weak transcription	NHEK	skin
23	chr19:56916800-56918800	Weak transcription	Fetal Thymus	thymus
24	chr19:56916800-56919600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr19:56916800-56920000	Weak transcription	Pancreas	Pancrea
26	chr19:56916800-56921800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr19:56916800-56936200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr19:56916800-56936200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr19:56917000-56918600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr19:56917000-56918800	Weak transcription	Right Ventricle	heart
31	chr19:56917000-56919000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr19:56917000-56919200	ZNF genes & repeats	Fetal Stomach	stomach
33	chr19:56917000-56920400	Strong transcription	Brain Angular Gyrus	brain
34	chr19:56917000-56926000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr19:56917000-56927200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
36	chr19:56917000-56931000	ZNF genes & repeats	Fetal Muscle Leg	muscle
37	chr19:56917000-56931200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr19:56917000-56937000	ZNF genes & repeats	Fetal Lung	lung
39	chr19:56917000-56938800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr19:56917000-56940000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
41	chr19:56917200-56918600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr19:56917200-56929800	ZNF genes & repeats	Primary B cells from cord blood	blood
43	chr19:56917200-56935800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr19:56917200-56936600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
45	chr19:56917200-56936600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
46	chr19:56917200-56937600	ZNF genes & repeats	Fetal Brain Female	brain
47	chr19:56917400-56919000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr19:56917400-56924400	Weak transcription	K562	blood
49	chr19:56917400-56944800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr19:56917600-56918800	Weak transcription	Gastric	stomach

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