Variant report

Variant	nsv580386
Chromosome Location	chr19:56924761-57072433
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:641)
CpG islands
(count:2323)
Chromatin interactive
region (count:16)
LncRNA
region (count:55)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

(count:641 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF3	chr19:56988997-56989631	H1-hESC	embryonic stem cell:	n/a	n/a
2	BACH1	chr19:57018807-57019161	H1-hESC	embryonic stem cell:	n/a	n/a
3	BACH1	chr19:56988129-56989735	H1-hESC	embryonic stem cell:	n/a	n/a
4	BACH1	chr19:57050354-57050813	H1-hESC	embryonic stem cell:	n/a	n/a
5	BACH1	chr19:57002772-57003159	H1-hESC	embryonic stem cell:	n/a	n/a
6	BATF	chr19:57006008-57006182	GM12878	blood:	n/a	n/a
7	BATF	chr19:57005926-57006227	GM12878	blood:	n/a	n/a
8	BCL11A	chr19:57005946-57006300	GM12878	blood:	n/a	n/a
9	BHLHE40	chr19:56989421-56989451	K562	blood:	n/a	n/a
10	BHLHE40	chr19:57050358-57050446	GM12878	blood:	n/a	n/a
11	BRCA1	chr19:57018909-57019098	H1-hESC	embryonic stem cell:	n/a	n/a
12	BRCA1	chr19:57009690-57009818	H1-hESC	embryonic stem cell:	n/a	n/a
13	BRCA1	chr19:57050604-57050791	H1-hESC	embryonic stem cell:	n/a	n/a
14	CBX3	chr19:56934943-56935689	K562	blood:	n/a	n/a
15	CBX3	chr19:56934598-56934867	K562	blood:	n/a	n/a
16	CEBPB	chr19:57002828-57003033	IMR90	lung:	n/a	chr19:57002892-57002904
17	CEBPB	chr19:56989368-56989798	H1-hESC	embryonic stem cell:	n/a	chr19:56989652-56989661 chr19:56989652-56989661 chr19:56989652-56989661
18	CEBPB	chr19:57055148-57055531	A549	lung:	n/a	chr19:57055337-57055348
19	CEBPB	chr19:57034280-57034480	HepG2	liver:	n/a	chr19:57034405-57034416
20	CEBPB	chr19:57055209-57055487	H1-hESC	embryonic stem cell:	n/a	chr19:57055337-57055348
21	CEBPB	chr19:57055191-57055492	K562	blood:	n/a	chr19:57055337-57055348
22	CEBPB	chr19:56935297-56935563	K562	blood:	n/a	chr19:56935376-56935387
23	CEBPB	chr19:56989289-56990099	IMR90	lung:	n/a	chr19:56989652-56989661 chr19:56989652-56989661 chr19:56989652-56989661
24	CEBPB	chr19:56980070-56980184	HepG2	liver:	n/a	chr19:56980115-56980126
25	CEBPB	chr19:57034299-57034494	A549	lung:	n/a	chr19:57034405-57034416
26	CEBPB	chr19:57018866-57019252	IMR90	lung:	n/a	n/a
27	CEBPB	chr19:57055163-57055521	HepG2	liver:	n/a	chr19:57055337-57055348
28	CEBPB	chr19:57055151-57055530	IMR90	lung:	n/a	chr19:57055337-57055348
29	CEBPB	chr19:57019023-57019246	H1-hESC	embryonic stem cell:	n/a	n/a
30	CEBPB	chr19:56954673-56954866	A549	lung:	n/a	chr19:56954765-56954776
31	CEBPB	chr19:56989481-56989788	A549	lung:	n/a	chr19:56989652-56989661 chr19:56989652-56989661 chr19:56989652-56989661
32	CEBPB	chr19:56989489-56989808	HepG2	liver:	n/a	chr19:56989652-56989661 chr19:56989652-56989661 chr19:56989652-56989661
33	CEBPB	chr19:56954711-56954807	HepG2	liver:	n/a	chr19:56954765-56954776
34	CEBPB	chr19:57055143-57055580	A549	lung:	n/a	chr19:57055337-57055348
35	CEBPB	chr19:57055211-57055572	MCF-7	breast:	n/a	chr19:57055337-57055348
36	CEBPB	chr19:56989477-56989808	K562	blood:	n/a	chr19:56989652-56989661 chr19:56989652-56989661 chr19:56989652-56989661
37	CEBPB	chr19:56967750-56967840	HepG2	liver:	n/a	chr19:56967822-56967833
38	CEBPB	chr19:56935273-56935539	A549	lung:	n/a	chr19:56935376-56935387
39	CEBPB	chr19:56967674-56967892	A549	lung:	n/a	chr19:56967822-56967833
40	CEBPB	chr19:56954724-56954779	H1-hESC	embryonic stem cell:	n/a	chr19:56954765-56954776
41	CEBPB	chr19:57055126-57055622	A549	lung:	n/a	chr19:57055337-57055348
42	CEBPB	chr19:56935314-56935541	HepG2	liver:	n/a	chr19:56935376-56935387
43	CHD1	chr19:57050277-57050612	H1-hESC	embryonic stem cell:	n/a	n/a
44	CHD1	chr19:56989564-56989769	H1-hESC	embryonic stem cell:	n/a	n/a
45	CHD2	chr19:57049739-57050064	H1-hESC	embryonic stem cell:	n/a	n/a
46	CHD2	chr19:57050629-57050805	H1-hESC	embryonic stem cell:	n/a	n/a
47	CHD2	chr19:57018785-57019737	H1-hESC	embryonic stem cell:	n/a	n/a
48	CHD2	chr19:56988838-56989767	H1-hESC	embryonic stem cell:	n/a	n/a
49	CREB1	chr19:57049612-57050035	ECC-1	luminal epithelium:	n/a	n/a
50	CREB1	chr19:57018823-57019608	H1-hESC	embryonic stem cell:	n/a	n/a

(count:2323 , 50 per page) page: 1 2 3 4 5 6 7 ... 47

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:57050359-57050409	HCPEpiC	choroid plexus:	n/a
2	chr19:56988929-56988979	IMR90	lung:	fetal
3	chr19:56989812-56989862	NB4	blood:	n/a
4	chr19:57067420-57067470	HIPEpiC	eye:	n/a
5	chr19:56988929-56988979	AoSMC	blood vessel:	n/a
6	chr19:57050359-57050409	HCPEpiC	choroid plexus:	n/a
7	chr19:56988929-56988979	IMR90	lung:	fetal
8	chr19:56989812-56989862	NB4	blood:	n/a
9	chr19:57067420-57067470	HIPEpiC	eye:	n/a
10	chr19:56988929-56988979	AoSMC	blood vessel:	n/a
11	chr19:57049777-57049827	SAEC	small airway:	n/a
12	chr19:57019279-57019329	AG04449	skin:	fetal
13	chr19:57049857-57049907	HEEpiC	esophagus:	n/a
14	chr19:56988935-56988985	HCPEpiC	choroid plexus:	n/a
15	chr19:56988806-56988856	Jurkat	blood:	n/a
16	chr19:57049857-57049907	NHDF-neo	bronchial:	n/a
17	chr19:56988205-56988255	SAEC	small airway:	n/a
18	chr19:57018848-57018898	AoSMC	blood vessel:	n/a
19	chr19:56988813-56988863	A549	lung:	n/a
20	chr19:56988935-56988985	HUVEC	blood vessel:	n/a
21	chr19:56989740-56989790	HCF	heart:	n/a
22	chr19:56989102-56989152	SK-N-SH	brain:	n/a
23	chr19:56988929-56988979	T-47D	breast:	n/a
24	chr19:56988935-56988985	IMR90	lung:	fetal
25	chr19:57019373-57019423	BE2_C	brain:	n/a
26	chr19:57046713-57046763	HCPEpiC	choroid plexus:	n/a
27	chr19:56988702-56988752	SKMC	muscle:	n/a
28	chr19:56988778-56988828	IMR90	lung:	fetal
29	chr19:57018848-57018898	HCF	heart:	n/a
30	chr19:56988935-56988985	SK-N-SH_RA	brain:	n/a
31	chr19:57019069-57019119	HRPEpiC	eye:	n/a
32	chr19:57050370-57050420	SK-N-SH_RA	brain:	n/a
33	chr19:57050359-57050409	HNPCEpiC	eye:	n/a
34	chr19:56988956-56989006	HRPEpiC	eye:	n/a
35	chr19:57018933-57018983	AG09319	gingival:	n/a
36	chr19:57018848-57018898	GM12892	blood:	n/a
37	chr19:56989740-56989790	HUVEC	blood vessel:	n/a
38	chr19:57018614-57018664	CMK	blood:	n/a
39	chr19:57050370-57050420	NB4	blood:	n/a
40	chr19:57049777-57049827	H1-hESC	embryonic stem cell:	embryo
41	chr19:56989812-56989862	Hepatocyte	liver:	n/a
42	chr19:57050370-57050420	CMK	blood:	n/a
43	chr19:57019016-57019066	NH-A	brain:	n/a
44	chr19:56988813-56988863	ProgFib	skin:	n/a
45	chr19:56989812-56989862	GM12878	blood:	n/a
46	chr19:57050370-57050420	Hepatocyte	liver:	n/a
47	chr19:56988702-56988752	A549	lung:	n/a
48	chr19:57049777-57049827	LNCaP	prostate:	n/a
49	chr19:57046713-57046763	AG04450	lung:	fetal
50	chr19:56988205-56988255	HL-60	blood:	n/a

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:57002795..57005630-chr19:57006374..57008169,2	MCF-7	breast:
2	chr19:56915589..56918201-chr19:56921743..56925459,4	K562	blood:
3	chr19:56936048..56938748-chr19:56941808..56944257,2	K562	blood:
4	chr19:56922748..56925351-chr19:56930754..56933374,2	K562	blood:
5	chr19:56653240..56655225-chr19:56994034..56995574,2	K562	blood:
6	chr19:56928898..56932035-chr19:56933505..56936936,3	K562	blood:
7	chr19:56913953..56915717-chr19:56929673..56932216,2	K562	blood:
8	chr19:56936048..56938748-chr19:56941808..56944257,2	K562	blood:
9	chr19:57019659..57020659-chr6:103890104..103890604,2	MCF-7	breast:
10	chr19:56922748..56925351-chr19:56930754..56933374,2	K562	blood:
11	chr19:56921777..56924252-chr19:56925183..56927455,2	K562	blood:
12	chr19:56936048..56937864-chr19:56941808..56944058,2	K562	blood:
13	chr19:57002795..57005630-chr19:57006374..57008169,2	MCF-7	breast:
14	chr19:56907962..56910475-chr19:56925379..56927319,2	K562	blood:
15	chr19:56978548..56980333-chr19:56983464..56985765,2	K562	blood:
16	chr19:56936048..56937864-chr19:56941808..56944058,2	K562	blood:

(count:55 , 50 per page) page: 1 2

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC004696.1-1	chr19:57005532-57006805	NONHSAT068157
2	lnc-AC004696.1-1	chr19:57006416-57006801	ENSG00000166770.6
3	lnc-ZNF667-3	chr19:57047527-57047701	ENSG00000267421.2
4	lnc-ZFP28-2	chr19:57037069-57037390	NONHSAT068165
5	lnc-ZNF667-3	chr19:57049020-57049106	ENSG00000267421.2
6	lnc-ZNF471-1	chr19:57050438-57050595	NONHSAT068172
7	lnc-ZNF667-3	chr19:57049020-57049106	ENSG00000267421.2
8	lnc-AC004696.1-1	chr19:57011463-57012035	ENSG00000166770.6
9	lnc-AC004696.1-1	chr19:57005532-57006805	NONHSAT068156
10	lnc-ZNF667-3	chr19:57049726-57049787	ENSG00000267421.2
11	lnc-AC004696.1-1	chr19:57005532-57005688	ENSG00000166770.6
12	lnc-AC004696.1-1	chr19:56989493-56989645	NONHSAT068157
13	lnc-ZNF582-2	chr19:56979088-56980304	ENSG00000250660
14	lnc-AC004696.1-1	chr19:56989609-56989662	ENSG00000166770.6
15	lnc-ZNF667-3	chr19:57047525-57047701	ENSG00000267421.2
16	lnc-AC004696.1-1	chr19:57005532-57005972	ENSG00000166770.6
17	lnc-AC004696.1-1	chr19:56988619-56990056	ENSG00000166770.6
18	lnc-AC004696.1-1	chr19:56989552-56989645	ENSG00000166770.6
19	lnc-ZNF582-2	chr19:56983068-56983553	ENSG00000250660
20	lnc-ZNF667-3	chr19:57047527-57047701	ENSG00000267421.2
21	lnc-AC004696.1-1	chr19:57006417-57006804	ENSG00000166770.6
22	lnc-ZNF667-3	chr19:57049617-57049684	ENSG00000267421.2
23	lnc-ZNF667-3	chr19:57049794-57049944	ENSG00000267421.2
24	lnc-ZNF667-2	chr19:57056935-57058640	ENSG00000245443
25	lnc-ZNF667-3	chr19:57049020-57049106	ENSG00000267421.2
26	lnc-ZNF667-2	chr19:57056935-57058640	ENSG00000269696.1
27	lnc-AC004696.1-1	chr19:57005532-57005711	ENSG00000166770.6
28	lnc-ZNF582-2	chr19:56985381-56987270	ENSG00000250660
29	lnc-AC004696.1-1	chr19:57008670-57008818	ENSG00000166770.6
30	lnc-ZNF667-3	chr19:57049622-57049744	ENSG00000267421.2
31	lnc-ZFP28-2	chr19:57021466-57021682	NONHSAT068165
32	lnc-ZNF667-3	chr19:57049017-57049800	ENSG00000267421.2
33	lnc-ZNF667-2	chr19:57056297-57058640	NONHSAT068173
34	lnc-ZNF667-3	chr19:57047527-57047701	ENSG00000267421.2
35	lnc-AC004696.1-1	chr19:56989243-56989750	NONHSAT068156
36	lnc-AC004696.1-1	chr19:57005532-57005711	ENSG00000166770.6
37	lnc-AC004696.1-1	chr19:57002946-57003135	ENSG00000166770.6
38	lnc-AC004696.1-1	chr19:57002946-57003135	ENSG00000166770.6
39	lnc-ZNF471-1	chr19:57055905-57056106	NONHSAT068172
40	lnc-AC004696.1-1	chr19:56988972-56989294	ENSG00000166770.6
41	lnc-AC004696.1-1	chr19:56989524-56989750	ENSG00000166770.6
42	lnc-AC004696.1-1	chr19:57005532-57005711	ENSG00000166770.6
43	lnc-AC004696.1-1	chr19:57005532-57006801	ENSG00000166770.6
44	lnc-AC004696.1-1	chr19:56989552-56989645	ENSG00000166770.6
45	lnc-ZNF470-2	chr19:57061815-57062398	NONHSAT068174
46	lnc-ZNF471-1	chr19:57050994-57051085	NONHSAT068172
47	lnc-AC004696.1-1	chr19:57006417-57006687	ENSG00000166770.6
48	lnc-ZFP28-1	chr19:57046668-57047132	ENSG00000267224.1
49	lnc-AC004696.1-1	chr19:57005532-57005696	ENSG00000166770.6
50	lnc-AC004696.1-1	chr19:56989552-56989750	ENSG00000166770.6

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	ZFP28	hsa-miR-335-5p	chr19:57063009-57063035

Variant related genes	Relation type
ENSG00000267421	TF binding region
ENSG00000267224	TF binding region
ZFP28	TF binding region
ZNF667	TF binding region
ZNF471	TF binding region
ZNF583	TF binding region
ZNF667-AS1	TF binding region
ENSG00000267421	CpG island
ENSG00000267224	CpG island
ZFP28	CpG island
ZNF667	CpG island
ZNF471	CpG island
ZNF583	CpG island
ZNF667-AS1	CpG island
ENSG00000198046	chromatin interactions
ENSG00000198440	chromatin interactions
ENSG00000167685	chromatin interactions
PIR	miRNA target sites
BRCA1	miRNA target sites
EIF4E	miRNA target sites
TMEM194A	miRNA target sites
TKT	miRNA target sites
IKBIP	miRNA target sites

Extended variants
information (count: 5436 )
Associated
traits (count: 77 )

Variant overlapped rSNPs/rCNVs (count:5436 , 50 per page) page: 1 2 3 4 5 6 7 ... 109

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs917649	chr19:56924761-56924762	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs528509143	chr19:56924780-56924781	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs547662363	chr19:56924837-56924838	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs570704845	chr19:56924848-56924849	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs539726666	chr19:56924952-56924953	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs549526503	chr19:56925009-56925010	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs569530962	chr19:56925101-56925102	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs77264215	chr19:56925128-56925129	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs191448371	chr19:56925149-56925150	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs150087277	chr19:56925184-56925185	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs534365686	chr19:56925198-56925199	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs557737412	chr19:56925200-56925201	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs578152782	chr19:56925205-56925206	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs530948044	chr19:56925219-56925220	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs544143377	chr19:56925254-56925255	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs375077211	chr19:56925276-56925277	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs369391456	chr19:56925283-56925284	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs373273637	chr19:56925312-56925313	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs3178703	chr19:56925324-56925325	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs200891336	chr19:56925365-56925366	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs200357603	chr19:56925368-56925369	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs202220424	chr19:56925376-56925377	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs201518989	chr19:56925381-56925382	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs200264013	chr19:56925409-56925410	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs201762230	chr19:56925417-56925418	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs557558563	chr19:56925429-56925430	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs369004715	chr19:56925438-56925439	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs139616608	chr19:56925450-56925451	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs183606433	chr19:56925494-56925495	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs550753326	chr19:56925572-56925573	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs543125216	chr19:56925605-56925606	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs55906953	chr19:56925625-56925626	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs559629385	chr19:56925646-56925647	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs528484849	chr19:56925652-56925653	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs373191163	chr19:56925663-56925664	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs565293378	chr19:56925678-56925679	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs368283461	chr19:56925680-56925681	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs533024410	chr19:56925691-56925692	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs199766207	chr19:56925721-56925722	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs201633189	chr19:56925736-56925737	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs549687563	chr19:56925740-56925741	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs143201423	chr19:56925764-56925765	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs146658580	chr19:56925792-56925793	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs55668037	chr19:56925856-56925857	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs188646121	chr19:56925892-56925893	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs191604923	chr19:56925898-56925899	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs55714946	chr19:56925905-56925906	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs79278592	chr19:56925954-56925955	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs565591695	chr19:56925956-56925957	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs55737356	chr19:56925960-56925961	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:77)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Colorectal cancer	16272173	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Breast cancer	21785460	CNVD
Myelofibrosis	22110671	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Alzheimer''s disease	22166940	CNVD
Heart disease	21282601	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Glioblastoma multiforme	21922591	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Breast cancer	20409316	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:3717 , 50 per page) page: 1 2 3 4 5 6 7 ... 75

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:56915800-56927000	ZNF genes & repeats	HSMM	muscle
2	chr19:56916000-56938600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr19:56916400-56926200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr19:56916400-56927000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
5	chr19:56916400-56929800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
6	chr19:56916400-56936600	ZNF genes & repeats	Brain Germinal Matrix	brain
7	chr19:56916400-56956000	ZNF genes & repeats	Liver	Liver
8	chr19:56916600-56935600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr19:56916600-56956000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
10	chr19:56916800-56936200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr19:56916800-56936200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr19:56917000-56926000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr19:56917000-56927200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
14	chr19:56917000-56931000	ZNF genes & repeats	Fetal Muscle Leg	muscle
15	chr19:56917000-56931200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr19:56917000-56937000	ZNF genes & repeats	Fetal Lung	lung
17	chr19:56917000-56938800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr19:56917000-56940000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
19	chr19:56917200-56929800	ZNF genes & repeats	Primary B cells from cord blood	blood
20	chr19:56917200-56935800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr19:56917200-56936600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
22	chr19:56917200-56936600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
23	chr19:56917200-56937600	ZNF genes & repeats	Fetal Brain Female	brain
24	chr19:56917400-56944800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr19:56917600-56939400	ZNF genes & repeats	Primary T cells from cord blood	blood
26	chr19:56918000-56924800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
27	chr19:56918000-56925000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr19:56918200-56926800	ZNF genes & repeats	Dnd41	blood
29	chr19:56918200-56927200	ZNF genes & repeats	Psoas Muscle	Psoas
30	chr19:56918200-56929800	ZNF genes & repeats	Ovary	ovary
31	chr19:56918200-56930200	Strong transcription	Placenta Amnion	Placenta Amnion
32	chr19:56918200-56930400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr19:56918200-56935000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
34	chr19:56918200-56936000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
35	chr19:56918200-56937600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr19:56918200-56938400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr19:56918200-56940000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
38	chr19:56918200-56940600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
39	chr19:56918200-56943400	ZNF genes & repeats	Brain Anterior Caudate	brain
40	chr19:56918400-56926200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
41	chr19:56918400-56926200	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
42	chr19:56918400-56927000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr19:56918400-56927000	ZNF genes & repeats	Colon Smooth Muscle	Colon
44	chr19:56918400-56927000	ZNF genes & repeats	Fetal Kidney	kidney
45	chr19:56918400-56928800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr19:56918400-56930400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
47	chr19:56918400-56931000	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
48	chr19:56918400-56935200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
49	chr19:56918400-56935600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
50	chr19:56918400-56936600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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