Variant report

Variant	nsv580960
Chromosome Location	chr2:9993451-10066694
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:708)
CpG islands
(count:183)
Chromatin interactive
region (count:83)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:708 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr2:10054894-10055193	K562	blood:	n/a	n/a
2	ARID3A	chr2:10036343-10036540	HepG2	liver:	n/a	n/a
3	ARID3A	chr2:10029607-10030329	HepG2	liver:	n/a	n/a
4	ARID3A	chr2:10052615-10052989	HepG2	liver:	n/a	n/a
5	ATF1	chr2:10054776-10055157	K562	blood:	n/a	n/a
6	ATF2	chr2:10054670-10055232	GM12878	blood:	n/a	n/a
7	ATF2	chr2:10054747-10055187	GM12878	blood:	n/a	n/a
8	ATF3	chr2:10054734-10055092	K562	blood:	n/a	n/a
9	ATF3	chr2:10054816-10055044	K562	blood:	n/a	n/a
10	BACH1	chr2:10054880-10055075	K562	blood:	n/a	n/a
11	BATF	chr2:10054796-10055100	GM12878	blood:	n/a	n/a
12	BATF	chr2:10037503-10037913	GM12878	blood:	n/a	chr2:10037722-10037733
13	BATF	chr2:10054687-10055086	GM12878	blood:	n/a	n/a
14	BCL11A	chr2:10054773-10055070	GM12878	blood:	n/a	n/a
15	BCL3	chr2:10054744-10055096	GM12878	blood:	n/a	n/a
16	BCLAF1	chr2:10054741-10055071	GM12878	blood:	n/a	n/a
17	BHLHE40	chr2:10054509-10055197	K562	blood:	n/a	n/a
18	BHLHE40	chr2:10054533-10055280	GM12878	blood:	n/a	n/a
19	BHLHE40	chr2:10054804-10055053	HepG2	liver:	n/a	n/a
20	BHLHE40	chr2:10054761-10055119	A549	lung:	n/a	n/a
21	BRCA1	chr2:10054772-10055123	Hela-S3	cervix:	n/a	n/a
22	BRCA1	chr2:10044919-10045008	Hela-S3	cervix:	n/a	n/a
23	CBX3	chr2:10054764-10055086	K562	blood:	n/a	n/a
24	CBX3	chr2:9998590-9998962	K562	blood:	n/a	n/a
25	CBX3	chr2:10037449-10038076	HCT-116	colon:	n/a	n/a
26	CBX3	chr2:9998428-9999134	K562	blood:	n/a	n/a
27	CBX3	chr2:10001188-10001598	K562	blood:	n/a	n/a
28	CBX3	chr2:10054734-10055156	K562	blood:	n/a	n/a
29	CCNT2	chr2:10054838-10055031	K562	blood:	n/a	n/a
30	CEBPB	chr2:10037529-10037582	K562	blood:	n/a	n/a
31	CEBPB	chr2:10008330-10008484	HepG2	liver:	n/a	chr2:10008390-10008401
32	CEBPB	chr2:10025512-10025640	Hela-S3	cervix:	n/a	chr2:10025547-10025560 chr2:10025547-10025560
33	CEBPB	chr2:10019462-10019644	Hela-S3	cervix:	n/a	chr2:10019565-10019576
34	CEBPB	chr2:10035958-10036168	A549	lung:	n/a	chr2:10036074-10036085
35	CEBPB	chr2:10035930-10036179	HepG2	liver:	n/a	chr2:10036074-10036085
36	CEBPB	chr2:10054862-10055052	GM12878	blood:	n/a	n/a
37	CEBPB	chr2:10030946-10030970	HepG2	liver:	n/a	chr2:10030954-10030965
38	CEBPB	chr2:10025368-10025730	IMR90	lung:	n/a	chr2:10025547-10025560 chr2:10025547-10025560
39	CEBPB	chr2:10037384-10037935	Hela-S3	cervix:	n/a	n/a
40	CEBPB	chr2:10035990-10036203	K562	blood:	n/a	chr2:10036074-10036085
41	CEBPB	chr2:10019527-10019593	HepG2	liver:	n/a	chr2:10019565-10019576
42	CEBPB	chr2:10035940-10036166	H1-hESC	embryonic stem cell:	n/a	chr2:10036074-10036085
43	CEBPB	chr2:10035903-10036189	HepG2	liver:	n/a	chr2:10036074-10036085
44	CEBPB	chr2:10029860-10030283	HepG2	liver:	n/a	n/a
45	CEBPB	chr2:10035937-10036268	ECC-1	luminal epithelium:	n/a	chr2:10036074-10036085
46	CEBPB	chr2:10037341-10037948	MCF-7	breast:	n/a	n/a
47	CEBPB	chr2:10008339-10008390	A549	lung:	n/a	n/a
48	CEBPB	chr2:10029931-10030117	HepG2	liver:	n/a	n/a
49	CEBPB	chr2:10037368-10037940	IMR90	lung:	n/a	n/a
50	CEBPB	chr2:10060444-10060687	HepG2	liver:	n/a	n/a

(count:183 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr2:10024636-10024686	RPTEC	kidney:	n/a
2	chr2:10037561-10037611	GM06990	blood:	n/a
3	chr2:10037561-10037611	A549	lung:	n/a
4	chr2:10024636-10024686	Caco-2	colon:	n/a
5	chr2:10037561-10037611	Caco-2	colon:	n/a
6	chr2:10054883-10054933	AG04450	lung:	fetal
7	chr2:10037561-10037611	HAEpiC	amniotic membrane:	n/a
8	chr2:10054883-10054933	HUVEC	blood vessel:	n/a
9	chr2:10037561-10037611	HEK293	kidney:	embryo
10	chr2:10054883-10054933	HCPEpiC	choroid plexus:	n/a
11	chr2:10037561-10037611	IMR90	lung:	fetal
12	chr2:10037561-10037611	AoSMC	blood vessel:	n/a
13	chr2:10054883-10054933	Hepatocyte	liver:	n/a
14	chr2:10024636-10024686	GM06990	blood:	n/a
15	chr2:10024636-10024686	NT2-D1	testis:	n/a
16	chr2:10054883-10054933	HMEC	breast:	n/a
17	chr2:10054883-10054933	U87	brain:	n/a
18	chr2:10054883-10054933	HCF	heart:	n/a
19	chr2:10024636-10024686	HepG2	liver:	n/a
20	chr2:10054883-10054933	PrEC	prostate:	n/a
21	chr2:10037561-10037611	HCF	heart:	n/a
22	chr2:10037561-10037611	HIPEpiC	eye:	n/a
23	chr2:10037561-10037611	H1-hESC	embryonic stem cell:	embryo
24	chr2:10024636-10024686	SK-N-SH_RA	brain:	n/a
25	chr2:10037561-10037611	T-47D	breast:	n/a
26	chr2:10037561-10037611	AG04449	skin:	fetal
27	chr2:10037561-10037611	AG10803	skin:	n/a
28	chr2:10024636-10024686	HMEC	breast:	n/a
29	chr2:10024636-10024686	H1-hESC	embryonic stem cell:	embryo
30	chr2:10024636-10024686	HCF	heart:	n/a
31	chr2:10037561-10037611	Jurkat	blood:	n/a
32	chr2:10024636-10024686	HPAEpiC	pulmonary alveolar:	n/a
33	chr2:10024636-10024686	HL-60	blood:	n/a
34	chr2:10024636-10024686	HIPEpiC	eye:	n/a
35	chr2:10024636-10024686	ovcar-3	ovarian:	n/a
36	chr2:10024636-10024686	HRPEpiC	eye:	n/a
37	chr2:10037561-10037611	HepG2	liver:	n/a
38	chr2:10024636-10024686	HUVEC	blood vessel:	n/a
39	chr2:10037561-10037611	NT2-D1	testis:	n/a
40	chr2:10024636-10024686	MCF10A-Er-Src	breast:	n/a
41	chr2:10037561-10037611	MCF-7	breast:	n/a
42	chr2:10024636-10024686	GM12878	blood:	n/a
43	chr2:10037561-10037611	NB4	blood:	n/a
44	chr2:10037561-10037611	ECC-1	luminal epithelium:	n/a
45	chr2:10054883-10054933	HCT-116	colon:	n/a
46	chr2:10024636-10024686	SKMC	muscle:	n/a
47	chr2:10054883-10054933	GM12878	blood:	n/a
48	chr2:10054883-10054933	GM12892	blood:	n/a
49	chr2:10037561-10037611	SAEC	small airway:	n/a
50	chr2:10037561-10037611	SKMC	muscle:	n/a

(count:83 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr2:10035308..10037799-chr2:10038582..10040182,2	MCF-7	breast:
2	chr2:10045993..10047524-chr2:10050988..10053341,2	K562	blood:
3	chr2:10055984..10058361-chr2:10061943..10063449,2	MCF-7	breast:
4	chr2:9949069..9951498-chr2:10025282..10028550,3	MCF-7	breast:
5	chr2:10054861..10056659-chr2:10057768..10060141,2	K562	blood:
6	chr2:10036109..10038742-chr2:10044743..10047677,2	K562	blood:
7	chr2:10053405..10055914-chr2:10061703..10065567,3	K562	blood:
8	chr2:10022528..10025369-chr2:10031502..10033505,2	K562	blood:
9	chr2:9990181..9994001-chr2:9995377..9997163,3	MCF-7	breast:
10	chr2:10013311..10015489-chr2:10017066..10019345,2	MCF-7	breast:
11	chr2:10027283..10029259-chr2:10030456..10033188,2	K562	blood:
12	chr2:9983413..9985341-chr2:10012554..10014436,2	K562	blood:
13	chr2:10053405..10055914-chr2:10061703..10064557,2	K562	blood:
14	chr2:9982531..9984237-chr2:10032924..10035073,2	MCF-7	breast:
15	chr2:9995313..9997002-chr2:10028213..10029998,2	MCF-7	breast:
16	chr2:9985865..9987759-chr2:9990520..9994621,3	MCF-7	breast:
17	chr2:9988819..9991090-chr2:9993199..9995026,2	MCF-7	breast:
18	chr2:9995313..9997002-chr2:10028213..10029998,2	MCF-7	breast:
19	chr2:9999348..10001334-chr2:10185106..10187713,2	K562	blood:
20	chr2:10025374..10028699-chr2:10030128..10032449,3	MCF-7	breast:
21	chr2:10045085..10047212-chr2:10048163..10049823,2	K562	blood:
22	chr2:10054070..10056636-chr2:10061535..10064977,4	MCF-7	breast:
23	chr2:10022528..10025369-chr2:10031502..10033505,2	K562	blood:
24	chr2:10033449..10037613-chr2:10038043..10042119,5	MCF-7	breast:
25	chr2:10006138..10008945-chr2:10011171..10013813,2	K562	blood:
26	chr2:10049796..10051308-chr2:10053649..10056131,2	K562	blood:
27	chr2:9939991..9942900-chr2:10036080..10038755,2	MCF-7	breast:
28	chr2:10040912..10043798-chr2:10089997..10091829,3	MCF-7	breast:
29	chr2:10047372..10050689-chr2:10052531..10055799,4	MCF-7	breast:
30	chr2:10013311..10015489-chr2:10017066..10019345,2	MCF-7	breast:
31	chr2:10025374..10028699-chr2:10030128..10032449,3	MCF-7	breast:
32	chr2:10032485..10035098-chr2:10036586..10038853,2	K562	blood:
33	chr2:10016707..10019550-chr2:10020625..10023178,3	K562	blood:
34	chr2:10037000..10039031-chr2:10044234..10045895,2	MCF-7	breast:
35	chr2:10023869..10026802-chr2:10030630..10033505,2	K562	blood:
36	chr2:9993849..9995462-chr2:10090061..10092204,2	MCF-7	breast:
37	chr2:10015734..10018207-chr2:10020455..10022125,2	K562	blood:
38	chr2:10028962..10031960-chr2:10261510..10264427,2	K562	blood:
39	chr2:10035308..10037799-chr2:10038582..10040182,2	MCF-7	breast:
40	chr2:10027283..10029259-chr2:10030456..10033188,2	K562	blood:
41	chr2:10054070..10056636-chr2:10061535..10064977,4	MCF-7	breast:
42	chr2:9940189..9942989-chr2:10049056..10050927,2	MCF-7	breast:
43	chr2:9982784..9985771-chr2:10027787..10030557,2	MCF-7	breast:
44	chr2:10037952..10040907-chr2:10047681..10050214,2	K562	blood:
45	chr2:10023869..10026802-chr2:10030630..10033505,2	K562	blood:
46	chr2:10053405..10055914-chr2:10061703..10065567,3	K562	blood:
47	chr2:10039201..10042198-chr2:10045779..10048080,2	MCF-7	breast:
48	chr2:10049796..10051308-chr2:10053649..10056131,2	K562	blood:
49	chr2:9990181..9994001-chr2:9995377..9997163,3	MCF-7	breast:
50	chr2:10019152..10020684-chr2:10028239..10030255,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CYS1-8	chr2:10062861-10063502	l_1772_chr2:10062860-10067461_breast

No data

Variant related genes	Relation type
TAF1B	TF binding region
TAF1B	CpG island
ENSG00000115750	chromatin interactions
ENSG00000134317	chromatin interactions
ENSG00000171848	chromatin interactions

Extended variants
information (count: 2818 )
Associated
traits (count: 64 )

Variant overlapped rSNPs/rCNVs (count:2818 , 50 per page) page: 1 2 3 4 5 6 7 ... 57

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7608055	chr2:9993451-9993452	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs566450217	chr2:9993464-9993465	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs182772673	chr2:9993495-9993496	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs575114433	chr2:9993541-9993542	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs540816519	chr2:9993543-9993544	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs543030878	chr2:9993548-9993549	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs368294132	chr2:9993572-9993573	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs2656333	chr2:9993617-9993618	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs76525892	chr2:9993619-9993620	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs532008821	chr2:9993636-9993637	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs552025611	chr2:9993755-9993756	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs571822725	chr2:9993758-9993759	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs115826573	chr2:9993784-9993785	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs547909176	chr2:9993797-9993798	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs567650308	chr2:9993848-9993849	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs536675847	chr2:9993879-9993880	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs532713411	chr2:9993894-9993895	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs73913905	chr2:9993970-9993971	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs569946322	chr2:9994002-9994003	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs73163617	chr2:9994013-9994014	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs142261102	chr2:9994041-9994042	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs187489614	chr2:9994075-9994076	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs4669470	chr2:9994090-9994091	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs534508625	chr2:9994096-9994097	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs374405534	chr2:9994106-9994107	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs146219146	chr2:9994122-9994123	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs79400826	chr2:9994131-9994132	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs538565298	chr2:9994230-9994231	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs371939061	chr2:9994266-9994267	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs4669471	chr2:9994288-9994289	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
31	rs141395106	chr2:9994292-9994293	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs72782619	chr2:9994293-9994294	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs565568507	chr2:9994327-9994328	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs372445625	chr2:9994397-9994398	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs374456324	chr2:9994421-9994422	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs199771174	chr2:9994449-9994450	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs376441869	chr2:9994457-9994458	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs11540130	chr2:9994476-9994477	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs192392069	chr2:9994508-9994509	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs370063775	chr2:9994531-9994532	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs547652861	chr2:9994533-9994534	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs199500882	chr2:9994535-9994536	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs35681700	chr2:9994563-9994564	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs16867200	chr2:9994572-9994573	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs550168530	chr2:9994662-9994663	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs183211016	chr2:9994683-9994684	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs538641856	chr2:9994699-9994700	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs554190937	chr2:9994700-9994701	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs2303916	chr2:9994717-9994718	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
50	rs369696803	chr2:9994718-9994719	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:64)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Mental retardation	17847001	CNVD
Glioblastoma multiforme	21080181	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Cancer	20164920	CNVD
Neuroblastoma	21508638	CNVD
Breast cancer	17603634	CNVD
Cancer	16751803	CNVD
Neuroblastoma	16790693	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	17393978	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17387387	CNVD
Neuroblastoma	17533364	CNVD
Neuroblastoma	18923191	CNVD
Endometrial cancer	22040021	CNVD
Adrenal tumor	17535989	CNVD
Breast cancer	21264507	CNVD
Basal cell lymphoma	17053054	CNVD
Medulloblastoma	17522785	CNVD
Cancer	23418310	CNVD
Ewing''s sarcoma	21437220	CNVD
Ependymoma	16718352	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
lymphocytic leukemia	21291569	CNVD
Prostate cancer	18632612	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Bladder cancer	21909424	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	18641027	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	20505157	CNVD
Autism	17483303	CNVD
Breast cancer	21804112	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Glioma	17123091	CNVD
Breast cancer	20409316	CNVD
Multiple myeloma	16616336	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Neuroblastoma	18923524	CNVD
Pancreatic cancer	17952125	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
early-passage human iPS cells	21368824	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD

Chromatin state (count:2115 , 50 per page) page: 1 2 3 4 5 6 7 ... 43

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:9984200-9994000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:9984600-9995400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:9984800-9997600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr2:9984800-9998400	Weak transcription	Pancreas	Pancrea
5	chr2:9985000-9993600	Weak transcription	Right Ventricle	heart
6	chr2:9985000-10000800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr2:9985200-9995600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr2:9985200-9997200	Weak transcription	Fetal Heart	heart
9	chr2:9985400-9993800	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr2:9985400-9995400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:9985400-9995400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:9985400-9995400	Weak transcription	Small Intestine	intestine
13	chr2:9985600-9993800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr2:9985600-9995400	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr2:9985600-9997200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr2:9985800-9997000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:9986200-9997800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr2:9986600-9996200	Strong transcription	A549	lung
19	chr2:9987200-10038400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr2:9987400-9997400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:9987400-10003200	Weak transcription	Stomach Mucosa	stomach
22	chr2:9987600-9997000	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr2:9987600-9998400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr2:9987800-9995200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:9987800-9996000	Strong transcription	Dnd41	blood
26	chr2:9989000-9995800	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr2:9989000-9997200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr2:9989000-9997200	Strong transcription	K562	blood
29	chr2:9989000-9997800	Strong transcription	Primary B cells from peripheral blood	blood
30	chr2:9989000-9997800	Strong transcription	HUVEC	blood vessel
31	chr2:9989000-9997800	Strong transcription	NH-A	brain
32	chr2:9989200-9997000	Strong transcription	HepG2	liver
33	chr2:9989200-9997600	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr2:9989200-9998200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr2:9989400-9993600	Strong transcription	HMEC	breast
36	chr2:9989400-9996000	Strong transcription	Fetal Brain Female	brain
37	chr2:9989400-9996200	Strong transcription	GM12878-XiMat	blood
38	chr2:9989400-9997600	Strong transcription	NHDF-Ad	bronchial
39	chr2:9989400-9997800	Strong transcription	Fetal Thymus	thymus
40	chr2:9989400-9998200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr2:9989400-9998400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr2:9989400-9999200	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr2:9989400-10000600	Strong transcription	Muscle Satellite Cultured Cells	--
44	chr2:9989400-10001000	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr2:9989600-9993600	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr2:9989600-9996400	Strong transcription	NHEK	skin
47	chr2:9989600-9996600	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr2:9989600-9996600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr2:9989600-9997400	Strong transcription	HSMM	muscle
50	chr2:9989600-9997600	Strong transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links