Variant report

Variant	nsv581784
Chromosome Location	chr2:48853134-48856770
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 157 )
Associated
traits (count: 86 )

Variant overlapped rSNPs/rCNVs (count:157 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs116316081	chr2:48853212-48853213	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs551101875	chr2:48853262-48853263	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs569617812	chr2:48853352-48853353	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs60298495	chr2:48853357-48853358	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs75650058	chr2:48853360-48853361	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs550469872	chr2:48853373-48853374	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs539483082	chr2:48853375-48853376	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs571684447	chr2:48853390-48853391	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs539020902	chr2:48853413-48853414	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs557710682	chr2:48853453-48853454	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs566040803	chr2:48853517-48853518	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs6712842	chr2:48853527-48853528	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs34764604	chr2:48853608-48853609	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs117870082	chr2:48853613-48853614	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs373875153	chr2:48853624-48853625	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs537763347	chr2:48853647-48853648	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs374158607	chr2:48853655-48853656	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs556022137	chr2:48853661-48853662	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs113736225	chr2:48853790-48853791	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs141677933	chr2:48853796-48853797	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs573825234	chr2:48853802-48853803	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs560234645	chr2:48853828-48853829	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs572054801	chr2:48853829-48853830	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs542658635	chr2:48853838-48853839	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs561345832	chr2:48853856-48853857	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs149313900	chr2:48853897-48853898	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs559132335	chr2:48853913-48853914	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs537632195	chr2:48853915-48853916	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs183873722	chr2:48853921-48853922	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs556255700	chr2:48854019-48854020	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs565556411	chr2:48854022-48854023	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs532600784	chr2:48854033-48854034	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs547468027	chr2:48854042-48854043	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs188448297	chr2:48854051-48854052	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs72806160	chr2:48854061-48854062	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs558693592	chr2:48854063-48854064	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs548627470	chr2:48854064-48854065	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs6752198	chr2:48854098-48854099	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs537625576	chr2:48854185-48854186	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs572680570	chr2:48854213-48854214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs556082784	chr2:48854215-48854216	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs77826900	chr2:48854233-48854234	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs115083292	chr2:48854247-48854248	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs181300197	chr2:48854250-48854251	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs571978452	chr2:48854253-48854254	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs560205498	chr2:48854259-48854260	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs540901543	chr2:48854268-48854269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs576429344	chr2:48854273-48854274	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs185128312	chr2:48854293-48854294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs560950702	chr2:48854301-48854302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:86)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17387387	CNVD
Neuroblastoma	17533364	CNVD
Neuroblastoma	18923191	CNVD
Endometrial cancer	22040021	CNVD
Adrenal tumor	17535989	CNVD
Breast cancer	21264507	CNVD
Basal cell lymphoma	17053054	CNVD
Medulloblastoma	17522785	CNVD
Cancer	23418310	CNVD
Breast cancer	17603634	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Ependymoma	16718352	CNVD
lymphocytic leukemia	21291569	CNVD
Prostate cancer	18632612	CNVD
Bladder cancer	21909424	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	20505157	CNVD
Autism	17483303	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Medulloblastoma	20607354	CNVD
Leukemia	18628472	CNVD
Autism	22495311	CNVD
Autism	18522746	CNVD
Breast cancer	21785460	CNVD
Lung cancer	18438408	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21508638	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Melanoma	18172304	CNVD
Cancer	16751803	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Williams Syndrome	20824207	CNVD
Breast cancer	16272173	CNVD
Lung cancer	17297452	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Ovarian cancer	21720365	CNVD
abnormal development	18461090	CNVD
Breast cancer	21364760	CNVD
Schizophrenia	20433910	CNVD
Autism	21701786	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Austim spectrum disorder	21302340	CNVD
Schizophrenia	20587603	CNVD
Schizophrenia	20553308	CNVD
Autism	22241247	CNVD
Myelofibrosis	22110671	CNVD
Lung adenocarcinoma	17086460	CNVD
Retinoblastoma	22278416	CNVD
Cancer	21183584	CNVD
Breast cancer	16397240	CNVD
Acute lymphoblastic leukemia	18768390	CNVD
Mental retardation	19521722	CNVD
Schizophrenia	18990708	CNVD
Schizophrenia	18940311	CNVD
Schizophrenia	19348701	CNVD
Schizophrenia	18945720	CNVD
Schizophrenia	19571808	CNVD
Prostate cancer	16573809	CNVD
Neuroticism	17667963	CNVD
Schizophrenia	19443537	CNVD
Schizophrenia	19546859	CNVD
Autism	17322880	CNVD
Lung cancer	17086460	CNVD
Chronic lymphocytic leukemia	17053054	CNVD
Hereditary non-polyposis colorectal cancer	19566914	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	22522925	CNVD
T-cell lymphomas	22341440	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:48831000-48859600	Weak transcription	Ovary	ovary
2	chr2:48836600-48862000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr2:48853000-48853400	ZNF genes & repeats	Colon Smooth Muscle	Colon
4	chr2:48853000-48854000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr2:48853400-48853800	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:48854000-48873600	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links