Variant report

Variant	nsv583862
Chromosome Location	chr2:180070574-180083591
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:180065428..180068289-chr2:180068662..180070588,2	K562	blood:
2	chr2:180083391..180084449-chr2:180205175..180206192,5	MCF-7	breast:
3	chr2:180083424..180084063-chr2:180275340..180276272,2	MCF-7	breast:
4	chr2:180083456..180084009-chr2:180615655..180616482,2	MCF-7	breast:
5	chr2:180083493..180084369-chr2:180219016..180219973,3	MCF-7	breast:
6	chr2:180083560..180084369-chr2:180205061..180206359,5	MCF-7	breast:
7	chr2:180068360..180070223-chr2:180071616..180074057,2	K562	blood:

Extended variants
information (count: 412 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:412 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs191150304	chr2:180070576-180070577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs143683392	chr2:180070662-180070663	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs530892715	chr2:180070704-180070705	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs540059370	chr2:180070750-180070751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs115493245	chr2:180070878-180070879	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs151059863	chr2:180070891-180070892	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs183037374	chr2:180070960-180070961	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs562501716	chr2:180070993-180070994	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs531363157	chr2:180071027-180071028	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs551081054	chr2:180071035-180071036	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs185230276	chr2:180071059-180071060	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs201287730	chr2:180071071-180071072	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs191171457	chr2:180071114-180071115	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs527861042	chr2:180071299-180071300	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs547974419	chr2:180071362-180071363	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs566386044	chr2:180071372-180071373	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs533671949	chr2:180071422-180071423	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs183265451	chr2:180071454-180071455	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs570015430	chr2:180071574-180071575	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs372531575	chr2:180071588-180071589	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs535469852	chr2:180071616-180071617	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs535765014	chr2:180071683-180071684	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs187590643	chr2:180071690-180071691	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs76625740	chr2:180071792-180071793	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs553922851	chr2:180071820-180071821	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs141007533	chr2:180071998-180071999	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs546057080	chr2:180072089-180072090	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs568869387	chr2:180072119-180072120	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs556219615	chr2:180072129-180072130	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs190450955	chr2:180072130-180072131	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs183040129	chr2:180072139-180072140	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs188419525	chr2:180072190-180072191	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs192690113	chr2:180072193-180072194	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs540811329	chr2:180072211-180072212	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs564677597	chr2:180072227-180072228	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs114434484	chr2:180072228-180072229	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs145096364	chr2:180072244-180072245	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs570032969	chr2:180072246-180072247	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs529203570	chr2:180072248-180072249	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs184580433	chr2:180072319-180072320	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs537522598	chr2:180072374-180072375	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs565776675	chr2:180072429-180072430	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs35230483	chr2:180072479-180072480	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs186550548	chr2:180072484-180072485	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs192602426	chr2:180072555-180072556	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs12105478	chr2:180072586-180072587	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs371293348	chr2:180072650-180072651	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs571048892	chr2:180072669-180072670	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs111244704	chr2:180072691-180072692	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs556396578	chr2:180072725-180072726	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Ependymoma	16718352	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	18522746	CNVD
Neurodevelopmental disorder	22521361	CNVD
Melanoma	18172304	CNVD
Cancer	16751803	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Seminomas	18059402	CNVD
Testicular germ cell tumor	18059402	CNVD
Breast cancer	16272173	CNVD
Ewing''s sarcoma	17952124	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Autism	16446308	CNVD
Autism	19401682	CNVD
Colorectal cancer	16272173	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Lung cancer	18438408	CNVD
Glioblastoma	21080181	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Prostate cancer	18632612	CNVD
Sudden cardiac death	19188705	CNVD
Acute myeloid leukemia	20729466	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	18923514	CNVD
Schizophrenia	22241247	CNVD
Mental retardation	21062444	CNVD
Facial dysmorphism	20548289	CNVD
Mental retardation	20548289	CNVD
Schizophrenia	19348701	CNVD
Muscular dystrophy	17160897	CNVD
Cardiomyopathy	17576883	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180067600-180097600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:180067600-180104600	Weak transcription	Fetal Kidney	kidney
3	chr2:180068000-180071000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:180068000-180071400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr2:180068000-180103800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr2:180068400-180092800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:180068600-180071200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:180068600-180071200	Weak transcription	Fetal Stomach	stomach
9	chr2:180068800-180070800	Weak transcription	Fetal Intestine Small	intestine
10	chr2:180070200-180071200	Weak transcription	Adipose Nuclei	Adipose
11	chr2:180070600-180070800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr2:180070800-180071600	ZNF genes & repeats	Fetal Intestine Small	intestine
13	chr2:180071000-180071200	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr2:180071200-180071600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:180071200-180071600	Enhancers	Adipose Nuclei	Adipose
16	chr2:180071200-180072000	ZNF genes & repeats	Fetal Stomach	stomach
17	chr2:180071200-180072200	Enhancers	HepG2	liver
18	chr2:180071400-180071600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
19	chr2:180071400-180072200	Enhancers	Left Ventricle	heart
20	chr2:180071800-180072400	Enhancers	Pancreas	Pancrea
21	chr2:180072400-180076800	Weak transcription	Fetal Stomach	stomach
22	chr2:180072400-180090400	Weak transcription	Pancreas	Pancrea
23	chr2:180076200-180077600	Enhancers	HepG2	liver
24	chr2:180076600-180077400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
25	chr2:180076800-180077400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr2:180076800-180077400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr2:180076800-180077400	ZNF genes & repeats	Fetal Intestine Large	intestine
28	chr2:180076800-180077400	ZNF genes & repeats	Fetal Stomach	stomach
29	chr2:180077000-180077400	ZNF genes & repeats	Fetal Intestine Small	intestine
30	chr2:180077000-180077600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr2:180077200-180077600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
32	chr2:180077600-180077800	Weak transcription	Fetal Stomach	stomach
33	chr2:180077600-180086400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr2:180083200-180083800	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr2:180083200-180083800	Enhancers	HSMMtube	muscle
36	chr2:180083200-180084200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr2:180083200-180084200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr2:180083400-180083800	Enhancers	Adipose Nuclei	Adipose
39	chr2:180083400-180083800	Enhancers	Fetal Heart	heart
40	chr2:180083400-180083800	Enhancers	Pancreatic Islets	Pancreatic Islet
41	chr2:180083400-180083800	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr2:180083400-180083800	Enhancers	HepG2	liver
43	chr2:180083400-180083800	Enhancers	HSMM	muscle
44	chr2:180083400-180084000	Enhancers	Liver	Liver
45	chr2:180083400-180084000	Enhancers	Colon Smooth Muscle	Colon
46	chr2:180083400-180084200	Enhancers	Muscle Satellite Cultured Cells	--
47	chr2:180083400-180084200	Enhancers	Brain Angular Gyrus	brain
48	chr2:180083400-180085400	Enhancers	Brain Hippocampus Middle	brain
49	chr2:180083400-180085600	Enhancers	Primary B cells from peripheral blood	blood
50	chr2:180083400-180085600	Enhancers	Brain Cingulate Gyrus	brain

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