Variant report

Variant	nsv583889
Chromosome Location	chr2:180414206-180421924
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180405427..180408122-chr2:180413189..180415887,2	MCF-7	breast:

Extended variants
information (count: 241 )
Associated
traits (count: 52 )

Variant overlapped rSNPs/rCNVs (count:241 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs147454087	chr2:180414248-180414249	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
2	rs556655030	chr2:180414325-180414326	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
3	rs536774896	chr2:180414346-180414347	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
4	rs553158406	chr2:180414355-180414356	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
5	rs542517166	chr2:180414389-180414390	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
6	rs575896698	chr2:180414417-180414418	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
7	rs572280430	chr2:180414419-180414420	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
8	rs192235856	chr2:180414428-180414429	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
9	rs139919105	chr2:180414430-180414431	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
10	rs578030409	chr2:180414485-180414486	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
11	rs184391503	chr2:180414497-180414498	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
12	rs531248947	chr2:180414552-180414553	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
13	rs563322606	chr2:180414595-180414596	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
14	rs62179175	chr2:180414607-180414608	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
15	rs568868901	chr2:180414609-180414610	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
16	rs528851830	chr2:180414653-180414654	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
17	rs549075858	chr2:180414704-180414705	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
18	rs13035596	chr2:180414715-180414716	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs560185009	chr2:180414787-180414788	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
20	rs528664584	chr2:180414842-180414843	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
21	rs370629261	chr2:180414846-180414847	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
22	rs557968321	chr2:180414910-180414911	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
23	rs4530328	chr2:180414913-180414914	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs116132852	chr2:180414917-180414918	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
25	rs143901026	chr2:180414922-180414923	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
26	rs144303148	chr2:180415013-180415014	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
27	rs377127767	chr2:180415085-180415086	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
28	rs148760875	chr2:180415174-180415175	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
29	rs142415749	chr2:180415243-180415244	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
30	rs573425526	chr2:180415367-180415368	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
31	rs544599200	chr2:180415383-180415384	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
32	rs190163932	chr2:180415462-180415463	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
33	rs372924068	chr2:180415519-180415520	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
34	rs151313889	chr2:180415521-180415522	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
35	rs577888275	chr2:180415531-180415532	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
36	rs543719997	chr2:180415565-180415566	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
37	rs563399374	chr2:180415626-180415627	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
38	rs192803700	chr2:180415635-180415636	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
39	rs59255331	chr2:180415636-180415637	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs542210974	chr2:180415681-180415682	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
41	rs567032008	chr2:180415712-180415713	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
42	rs558920081	chr2:180415714-180415715	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
43	rs371318551	chr2:180415735-180415736	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
44	rs62179176	chr2:180415772-180415773	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs565158936	chr2:180415798-180415799	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
46	rs139405825	chr2:180415851-180415852	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
47	rs551266449	chr2:180415855-180415856	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
48	rs377653026	chr2:180415885-180415886	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
49	rs567816676	chr2:180415901-180415902	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
50	rs113803932	chr2:180415903-180415904	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:52)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Ependymoma	16718352	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	18522746	CNVD
Neurodevelopmental disorder	22521361	CNVD
Melanoma	18172304	CNVD
Cancer	16751803	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Seminomas	18059402	CNVD
Testicular germ cell tumor	18059402	CNVD
Breast cancer	16272173	CNVD
Ewing''s sarcoma	17952124	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Autism	16446308	CNVD
Autism	19401682	CNVD
Colorectal cancer	16272173	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Lung cancer	18438408	CNVD
Glioblastoma	21080181	CNVD
Prostate cancer	18632612	CNVD
Sudden cardiac death	19188705	CNVD
Acute myeloid leukemia	20729466	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
small cell lung cancer	20016488	CNVD
Mental retardation	21062444	CNVD
Facial dysmorphism	20548289	CNVD
Mental retardation	20548289	CNVD
Schizophrenia	19348701	CNVD
Muscular dystrophy	17160897	CNVD
Cardiomyopathy	17576883	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Breast cancer	22522925	CNVD
Myelofibrosis	22110671	CNVD

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180408400-180423400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:180408800-180415600	Weak transcription	Fetal Brain Female	brain
3	chr2:180410000-180415400	Weak transcription	Liver	Liver
4	chr2:180410200-180415400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:180410600-180416200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:180413800-180414600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:180413800-180416200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
8	chr2:180414000-180414600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
9	chr2:180414000-180416200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr2:180414000-180416400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr2:180414000-180416800	Enhancers	HepG2	liver
12	chr2:180414200-180416600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr2:180414200-180417000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr2:180414400-180415000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:180414600-180415000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr2:180414600-180415400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr2:180414800-180415400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:180414800-180415600	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr2:180414800-180415600	Enhancers	Fetal Brain Male	brain
20	chr2:180414800-180416000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr2:180414800-180417000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr2:180415000-180415200	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr2:180415000-180416200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr2:180415200-180415600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
25	chr2:180415400-180415800	Enhancers	H1 Cell Line	embryonic stem cell
26	chr2:180415400-180415800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr2:180415400-180415800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr2:180415400-180416200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr2:180415400-180416600	Enhancers	H9 Cell Line	embryonic stem cell
30	chr2:180415400-180416600	Enhancers	Liver	Liver
31	chr2:180415600-180415800	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr2:180415600-180416000	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr2:180415600-180416200	Enhancers	Fetal Brain Female	brain
34	chr2:180415600-180426600	Weak transcription	Fetal Brain Male	brain
35	chr2:180415800-180416400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr2:180415800-180416600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
37	chr2:180415800-180432400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr2:180416000-180416400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
39	chr2:180416200-180416400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
40	chr2:180416200-180416400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
41	chr2:180416200-180416600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr2:180416200-180416600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr2:180416200-180416600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr2:180416200-180420400	Weak transcription	Fetal Brain Female	brain
45	chr2:180416400-180416600	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr2:180416400-180417000	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr2:180416400-180417000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
48	chr2:180416400-180417400	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr2:180416600-180416800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
50	chr2:180416600-180420000	Weak transcription	Liver	Liver

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