Variant report

Variant	nsv585540
Chromosome Location	chr20:14858910-15242365
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2836)
CpG islands
(count:244)
Chromatin interactive
region (count:34)
LncRNA
region (count:21)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2836 , 50 per page) page: 1 2 3 4 5 6 7 ... 57

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr20:14965101-14967567	HepG2	liver:	n/a	n/a
2	ARID3A	chr20:14859363-14860384	HepG2	liver:	n/a	n/a
3	ARID3A	chr20:15042539-15043096	HepG2	liver:	n/a	n/a
4	ARID3A	chr20:15144336-15144711	HepG2	liver:	n/a	n/a
5	ARID3A	chr20:14986003-14986310	HepG2	liver:	n/a	n/a
6	ARID3A	chr20:14971646-14973208	HepG2	liver:	n/a	n/a
7	ARID3A	chr20:15041045-15042049	HepG2	liver:	n/a	n/a
8	ARID3A	chr20:14936639-14937073	HepG2	liver:	n/a	n/a
9	ARID3A	chr20:15139111-15139485	HepG2	liver:	n/a	n/a
10	ARID3A	chr20:14959886-14961038	HepG2	liver:	n/a	n/a
11	ATF2	chr20:15180324-15181228	GM12878	blood:	n/a	n/a
12	ATF2	chr20:15180601-15181187	GM12878	blood:	n/a	n/a
13	ATF2	chr20:14883084-14883368	GM12878	blood:	n/a	n/a
14	ATF2	chr20:15142645-15143351	GM12878	blood:	n/a	n/a
15	ATF2	chr20:15142556-15143423	GM12878	blood:	n/a	n/a
16	ATF3	chr20:14965454-14966225	A549	lung:	n/a	n/a
17	ATF3	chr20:14859536-14860398	A549	lung:	n/a	n/a
18	ATF3	chr20:14966529-14967363	A549	lung:	n/a	n/a
19	ATF3	chr20:14859595-14860443	A549	lung:	n/a	n/a
20	ATF3	chr20:14966508-14967301	A549	lung:	n/a	n/a
21	BACH1	chr20:14952997-14953174	H1-hESC	embryonic stem cell:	n/a	n/a
22	BACH1	chr20:15144468-15144534	H1-hESC	embryonic stem cell:	n/a	n/a
23	BATF	chr20:15041087-15041347	GM12878	blood:	n/a	n/a
24	BATF	chr20:14860056-14860418	GM12878	blood:	n/a	chr20:14860263-14860273 chr20:14860262-14860273 chr20:14860267-14860277
25	BATF	chr20:15217496-15217756	GM12878	blood:	n/a	n/a
26	BATF	chr20:15142631-15143004	GM12878	blood:	n/a	n/a
27	BATF	chr20:15180677-15181088	GM12878	blood:	n/a	chr20:15180905-15180913
28	BATF	chr20:14883072-14883470	GM12878	blood:	n/a	n/a
29	BATF	chr20:15040971-15041310	GM12878	blood:	n/a	n/a
30	BATF	chr20:15229264-15229547	GM12878	blood:	n/a	n/a
31	BATF	chr20:15142669-15143382	GM12878	blood:	n/a	n/a
32	BATF	chr20:15143005-15143338	GM12878	blood:	n/a	n/a
33	BATF	chr20:15180351-15181277	GM12878	blood:	n/a	chr20:15180905-15180913
34	BATF	chr20:14883118-14883412	GM12878	blood:	n/a	n/a
35	BATF	chr20:14931782-14932075	GM12878	blood:	n/a	n/a
36	BATF	chr20:14860106-14860399	GM12878	blood:	n/a	chr20:14860263-14860273 chr20:14860262-14860273 chr20:14860267-14860277
37	BCL11A	chr20:14859536-14859807	GM12878	blood:	n/a	n/a
38	BCL11A	chr20:15180658-15181150	GM12878	blood:	n/a	n/a
39	BCL11A	chr20:15180758-15180983	GM12878	blood:	n/a	n/a
40	BCL11A	chr20:14883093-14883400	GM12878	blood:	n/a	chr20:14883229-14883238
41	BCL11A	chr20:14883096-14883392	GM12878	blood:	n/a	chr20:14883229-14883238
42	BCL3	chr20:14859514-14860394	A549	lung:	n/a	chr20:14860151-14860160 chr20:14860265-14860274
43	BCL3	chr20:14859331-14860569	A549	lung:	n/a	chr20:14860151-14860160 chr20:14859419-14859428 chr20:14860265-14860274
44	BCL3	chr20:14966427-14967324	A549	lung:	n/a	n/a
45	BCL3	chr20:14966411-14967352	A549	lung:	n/a	n/a
46	BCL3	chr20:15180753-15181061	GM12878	blood:	n/a	n/a
47	BCL3	chr20:14965529-14966338	A549	lung:	n/a	chr20:14966177-14966184
48	BCLAF1	chr20:15142637-15143439	GM12878	blood:	n/a	n/a
49	BHLHE40	chr20:15042548-15042950	HepG2	liver:	n/a	n/a
50	BHLHE40	chr20:14960125-14960599	HepG2	liver:	n/a	n/a

(count:244 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr20:15177509-15177559	Caco-2	colon:	n/a
2	chr20:15176830-15176880	HIPEpiC	eye:	n/a
3	chr20:15176557-15176607	HNPCEpiC	eye:	n/a
4	chr20:15176830-15176880	MCF-7	breast:	n/a
5	chr20:15176830-15176880	Hepatocyte	liver:	n/a
6	chr20:15177509-15177559	SAEC	small airway:	n/a
7	chr20:14904432-14904482	MCF10A-Er-Src	breast:	n/a
8	chr20:15177509-15177559	H1-hESC	embryonic stem cell:	embryo
9	chr20:14904432-14904482	NB4	blood:	n/a
10	chr20:15176830-15176880	HAEpiC	amniotic membrane:	n/a
11	chr20:14904432-14904482	ECC-1	luminal epithelium:	n/a
12	chr20:15176557-15176607	HAEpiC	amniotic membrane:	n/a
13	chr20:14904432-14904482	GM12878	blood:	n/a
14	chr20:15176557-15176607	K562	blood:	n/a
15	chr20:15177509-15177559	HCM	heart:	n/a
16	chr20:15176557-15176607	NH-A	brain:	n/a
17	chr20:15176830-15176880	SK-N-MC	brain:	n/a
18	chr20:14904432-14904482	BE2_C	brain:	n/a
19	chr20:15176830-15176880	GM12878	blood:	n/a
20	chr20:15176557-15176607	HEEpiC	esophagus:	n/a
21	chr20:15176557-15176607	U87	brain:	n/a
22	chr20:15176557-15176607	Jurkat	blood:	n/a
23	chr20:14904432-14904482	HRCEpiC	kidney:	n/a
24	chr20:14904432-14904482	AoSMC	blood vessel:	n/a
25	chr20:15176830-15176880	K562	blood:	n/a
26	chr20:15176830-15176880	HCF	heart:	n/a
27	chr20:15177509-15177559	SK-N-SH	brain:	n/a
28	chr20:15176557-15176607	HCPEpiC	choroid plexus:	n/a
29	chr20:15177509-15177559	LNCaP	prostate:	n/a
30	chr20:15177509-15177559	GM12878	blood:	n/a
31	chr20:15176830-15176880	HMEC	breast:	n/a
32	chr20:14904432-14904482	HNPCEpiC	eye:	n/a
33	chr20:15176557-15176607	ProgFib	skin:	n/a
34	chr20:15177509-15177559	BJ	skin:	n/a
35	chr20:14904432-14904482	SK-N-MC	brain:	n/a
36	chr20:15176557-15176607	AG04450	lung:	fetal
37	chr20:15176557-15176607	MCF-7	breast:	n/a
38	chr20:14904432-14904482	GM19239	blood:	n/a
39	chr20:15176557-15176607	Caco-2	colon:	n/a
40	chr20:15176557-15176607	HCF	heart:	n/a
41	chr20:15176830-15176880	U87	brain:	n/a
42	chr20:15176830-15176880	H1-hESC	embryonic stem cell:	embryo
43	chr20:15177509-15177559	HEK293	kidney:	embryo
44	chr20:14904432-14904482	CMK	blood:	n/a
45	chr20:14904432-14904482	AG04450	lung:	fetal
46	chr20:14904432-14904482	Hepatocyte	liver:	n/a
47	chr20:15176557-15176607	HMEC	breast:	n/a
48	chr20:15176830-15176880	T-47D	breast:	n/a
49	chr20:14904432-14904482	AG04449	skin:	fetal
50	chr20:15176830-15176880	NH-A	brain:	n/a

(count:34 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:14857662..14859546-chr20:15214980..15217486,2	MCF-7	breast:
2	chr20:14862084..14865220-chr20:14867174..14871364,3	MCF-7	breast:
3	chr20:14861831..14864729-chr20:14900336..14902240,2	MCF-7	breast:
4	chr20:14859239..14863091-chr20:15040405..15044044,4	MCF-7	breast:
5	chr20:14913183..14915031-chr20:14915260..14917096,2	MCF-7	breast:
6	chr20:14856302..14859235-chr20:14930877..14933226,2	MCF-7	breast:
7	chr20:14856302..14859235-chr20:14930877..14933226,2	MCF-7	breast:
8	chr20:14314384..14315320-chr20:14929469..14930347,2	MCF-7	breast:
9	chr20:15222565..15225391-chr20:15228675..15231649,2	MCF-7	breast:
10	chr20:14593902..14596386-chr20:15052997..15054796,2	K562	blood:
11	chr20:14050662..14052329-chr20:14946506..14948938,2	MCF-7	breast:
12	chr20:14316387..14318274-chr20:15215878..15217670,2	MCF-7	breast:
13	chr20:14857662..14859546-chr20:15214980..15217486,2	MCF-7	breast:
14	chr20:14859239..14863091-chr20:15040405..15044044,4	MCF-7	breast:
15	chr20:14895407..14897578-chr20:14900614..14902594,2	MCF-7	breast:
16	chr20:14892181..14894488-chr20:14900218..14901785,2	MCF-7	breast:
17	chr20:14925222..14927929-chr20:14930721..14932848,2	MCF-7	breast:
18	chr20:14892181..14894488-chr20:14900218..14901785,2	MCF-7	breast:
19	chr20:14898344..14901833-chr20:14901900..14905742,3	MCF-7	breast:
20	chr20:14983136..14983867-chr7:139874694..139875444,2	MCF-7	breast:
21	chr20:14867933..14870632-chr20:14873919..14875816,2	MCF-7	breast:
22	chr20:14861831..14864729-chr20:14900336..14902240,2	MCF-7	breast:
23	chr20:14905161..14907169-chr20:14915982..14918854,2	MCF-7	breast:
24	chr20:14901786..14904742-chr20:14908050..14909865,2	MCF-7	breast:
25	chr20:14825814..14826804-chr20:14859521..14860363,2	MCF-7	breast:
26	chr20:14867933..14870632-chr20:14873919..14875816,2	MCF-7	breast:
27	chr20:14925222..14927929-chr20:14930721..14932848,2	MCF-7	breast:
28	chr20:15213744..15214594-chr5:107680986..107681674,2	MCF-7	breast:
29	chr20:14845184..14847390-chr20:14926741..14929314,2	MCF-7	breast:
30	chr20:14895407..14897578-chr20:14900614..14902594,2	MCF-7	breast:
31	chr20:14898344..14901833-chr20:14901900..14905742,3	MCF-7	breast:
32	chr20:14901786..14904742-chr20:14908050..14909865,2	MCF-7	breast:
33	chr20:14862084..14865220-chr20:14867174..14871364,3	MCF-7	breast:
34	chr20:15222565..15225391-chr20:15228675..15231649,2	MCF-7	breast:

(count:21 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FLRT3-1	chr20:14910021-14910161	ENSG00000235914.1
2	lnc-FLRT3-2	chr20:14915576-14915720	ENSG00000237832.1
3	lnc-FLRT3-1	chr20:14910021-14910154	NONHSAT078722
4	lnc-FLRT3-1	chr20:14864898-14865240	NONHSAT078722
5	lnc-FLRT3-1	chr20:14885587-14886675	ENSG00000235914.1
6	lnc-FLRT3-1	chr20:14910021-14910142	NONHSAT078721
7	lnc-FLRT3-1	chr20:14868742-14868950	ENSG00000235914.1
8	lnc-FLRT3-1	chr20:14864899-14865240	ENSG00000235914.1
9	lnc-C20orf7-3	chr20:14868789-14869314	NONHSAT078714
10	lnc-FLRT3-1	chr20:14868742-14868950	NONHSAT078721
11	lnc-FLRT3-2	chr20:14915884-14916009	ENSG00000237832.1
12	lnc-FLRT3-1	chr20:14864896-14865240	NONHSAT078721
13	lnc-FLRT3-1	chr20:14864899-14865240	NR_110318
14	lnc-FLRT3-1	chr20:14864899-14865240	NR_037841
15	lnc-FLRT3-1	chr20:14868742-14868950	NR_037841
16	lnc-FLRT3-1	chr20:14910021-14910164	NR_072988
17	lnc-FLRT3-2	chr20:14914489-14914588	ENSG00000237832.1
18	lnc-FLRT3-1	chr20:14885587-14886675	NR_072988
19	lnc-FLRT3-1	chr20:14910021-14910164	NR_037841
20	lnc-FLRT3-1	chr20:14910021-14910132	ENSG00000235914.1
21	lnc-FLRT3-1	chr20:14910021-14910164	NR_110318

No data

Variant related genes	Relation type
MACROD2	TF binding region
ENSG00000237832	TF binding region
RNU6-1159P	TF binding region
RNU6-115P	TF binding region
MACROD2-AS1	TF binding region
MACROD2	CpG island
ENSG00000237832	CpG island
RNU6-1159P	CpG island
RNU6-115P	CpG island
MACROD2-AS1	CpG island
ENSG00000237832	chromatin interactions
ENSG00000125848	chromatin interactions

Extended variants
information (count: 11699 )
Associated
traits (count: 72 )

Variant overlapped rSNPs/rCNVs (count:11699 , 50 per page) page: 1 2 3 4 5 6 7 ... 234

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6042957	chr20:14858910-14858911	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs548771752	chr20:14858931-14858932	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs561061735	chr20:14858932-14858933	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs528276202	chr20:14858933-14858934	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs187497997	chr20:14858934-14858935	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs117205833	chr20:14858942-14858943	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs138277905	chr20:14858957-14858958	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs193073331	chr20:14858999-14859000	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs77230640	chr20:14859024-14859025	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs550856292	chr20:14859053-14859054	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs569116004	chr20:14859078-14859079	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs536663564	chr20:14859083-14859084	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs554737180	chr20:14859097-14859098	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs566982524	chr20:14859177-14859178	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs6042958	chr20:14859283-14859284	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs183108191	chr20:14859296-14859297	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs558764502	chr20:14859328-14859329	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs35466888	chr20:14859378-14859379	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs143927863	chr20:14859423-14859424	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs370965368	chr20:14859432-14859433	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs6042959	chr20:14859440-14859441	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs188346945	chr20:14859455-14859456	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs575105266	chr20:14859473-14859474	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs542638162	chr20:14859511-14859512	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs192579550	chr20:14859652-14859653	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs541280922	chr20:14859665-14859666	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs150638808	chr20:14859709-14859710	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs35646292	chr20:14859711-14859712	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs34875762	chr20:14859714-14859715	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs139575142	chr20:14859727-14859728	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs565027019	chr20:14859729-14859730	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs149285404	chr20:14859765-14859766	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs550565753	chr20:14859777-14859778	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs569154098	chr20:14859788-14859789	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs530021683	chr20:14859838-14859839	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs548596937	chr20:14859844-14859845	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs578189476	chr20:14859867-14859868	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs566614308	chr20:14859874-14859875	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs566191540	chr20:14859908-14859909	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs534072524	chr20:14859954-14859955	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs143609087	chr20:14859956-14859957	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs534778276	chr20:14859963-14859964	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs558626875	chr20:14859999-14860000	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs144633523	chr20:14860184-14860185	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs538456180	chr20:14860191-14860192	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs184508267	chr20:14860197-14860198	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs575114059	chr20:14860300-14860301	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs542249613	chr20:14860338-14860339	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs2210049	chr20:14860372-14860373	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs572881054	chr20:14860409-14860410	Active TSS Flanking Active TSS Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:72)

Disease	PMID	Source
Breast cancer	16397240	CNVD
abortions and stillbirths	19751515	CNVD
Wilms tumour	21544195	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	16272173	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Glaucoma	21310917	CNVD
Alagille syndrome	22470819	CNVD
Lung cancer	16773561	CNVD
Renal cell carcinoma	18765545	CNVD
Alagille syndrome	17576883	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
Prostate cancer	18632612	CNVD
Ewing''s sarcoma	18628472	CNVD
Glioblastoma multiforme	18628472	CNVD
Leukemia	18628472	CNVD
Myelofibrosis	22110671	CNVD
Kabuki syndrome	21720541	CNVD
Glioblastoma multiforme	22286061	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Neurocytoma	17123091	CNVD
Glioblastoma multiforme	21138945	CNVD
Cancer	20164919	CNVD
Multiple sclerosis	20663923	CNVD
Schizophrenia	20663923	CNVD
brain infarct	20663923	CNVD
Breast cancer	22522925	CNVD
Breast cancer	17142309	CNVD
Cancer	20164920	CNVD
Schizophrenia	23813976	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Autism	20531469	CNVD
Melanoma	17363583	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Schizophrenia	20967226	CNVD
Cancer	21272361	CNVD
Schizophrenia	19805367	CNVD
Breast cancer	21364760	CNVD
Non-small cell lung cancer	16651412	CNVD

Chromatin state (count:1548 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:14857400-14859600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr20:14857400-14861000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr20:14858000-14859600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr20:14858400-14859000	Enhancers	NHDF-Ad	bronchial
5	chr20:14858400-14859600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr20:14858400-14861400	Enhancers	HMEC	breast
7	chr20:14858600-14859000	Enhancers	Brain Germinal Matrix	brain
8	chr20:14858600-14859400	Enhancers	A549	lung
9	chr20:14858600-14859600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr20:14858600-14860000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr20:14858600-14861200	Enhancers	NHEK	skin
12	chr20:14858600-14861600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr20:14858800-14859600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr20:14858800-14859800	Weak transcription	NH-A	brain
15	chr20:14859000-14860600	Weak transcription	NHDF-Ad	bronchial
16	chr20:14859200-14860000	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr20:14859400-14859600	Enhancers	Fetal Intestine Small	intestine
18	chr20:14859400-14860400	Enhancers	Liver	Liver
19	chr20:14859400-14861000	Flanking Active TSS	A549	lung
20	chr20:14859400-14861200	Enhancers	Hela-S3	cervix
21	chr20:14859400-14861800	Enhancers	HepG2	liver
22	chr20:14859400-14862600	Enhancers	Duodenum Mucosa	Duodenum
23	chr20:14859600-14860200	Enhancers	Stomach Mucosa	stomach
24	chr20:14859600-14860400	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr20:14859600-14860400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr20:14859600-14860600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr20:14859600-14860600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr20:14859600-14860600	Weak transcription	Fetal Intestine Small	intestine
29	chr20:14859600-14861000	Enhancers	Muscle Satellite Cultured Cells	--
30	chr20:14859800-14860800	Enhancers	NH-A	brain
31	chr20:14859800-14861000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr20:14859800-14861000	Enhancers	HUVEC	blood vessel
33	chr20:14860000-14860400	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr20:14860000-14860600	Enhancers	Brain Hippocampus Middle	brain
35	chr20:14860000-14860800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr20:14860000-14860800	Enhancers	Dnd41	blood
37	chr20:14860000-14861400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr20:14860200-14860600	Enhancers	Brain Substantia Nigra	brain
39	chr20:14860200-14862400	Enhancers	Fetal Intestine Large	intestine
40	chr20:14860200-14865600	Weak transcription	Stomach Mucosa	stomach
41	chr20:14860400-14860600	Enhancers	Pancreatic Islets	Pancreatic Islet
42	chr20:14860400-14860800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr20:14860400-14861000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr20:14860600-14860800	Active TSS	Brain Angular Gyrus	brain
45	chr20:14860600-14860800	Active TSS	Brain Inferior Temporal Lobe	brain
46	chr20:14860600-14860800	Enhancers	Fetal Intestine Small	intestine
47	chr20:14860600-14860800	Enhancers	NHDF-Ad	bronchial
48	chr20:14860600-14861000	Active TSS	Brain Cingulate Gyrus	brain
49	chr20:14860600-14861000	Flanking Active TSS	Brain Hippocampus Middle	brain
50	chr20:14860600-14861000	Flanking Active TSS	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links