Variant report

Variant	nsv585628
Chromosome Location	chr20:15303029-15304048
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 64 )

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs557410146	chr20:15303037-15303038	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs144128072	chr20:15303173-15303174	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs535334849	chr20:15303178-15303179	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs536789758	chr20:15303207-15303208	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs566001679	chr20:15303216-15303217	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs148622739	chr20:15303268-15303269	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs6079749	chr20:15303290-15303291	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs573432472	chr20:15303307-15303308	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs535224911	chr20:15303369-15303370	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs540474049	chr20:15303405-15303406	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs36029610	chr20:15303451-15303452	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs565097113	chr20:15303462-15303463	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs558112529	chr20:15303498-15303499	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs191649045	chr20:15303519-15303520	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs182316393	chr20:15303586-15303587	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs544481600	chr20:15303624-15303625	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs573801994	chr20:15303625-15303626	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs6110571	chr20:15303701-15303702	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs562978462	chr20:15303715-15303716	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs200298995	chr20:15303739-15303740	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs549107010	chr20:15303742-15303743	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs560821377	chr20:15303748-15303749	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs201224416	chr20:15303767-15303768	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs186684303	chr20:15303774-15303775	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs546829746	chr20:15303779-15303780	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs193117492	chr20:15303787-15303788	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs538965836	chr20:15303832-15303833	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs565668485	chr20:15303839-15303840	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs550882260	chr20:15303887-15303888	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs7268299	chr20:15303888-15303889	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs185627056	chr20:15303937-15303938	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs534322991	chr20:15303942-15303943	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs190102301	chr20:15303948-15303949	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs536249629	chr20:15303991-15303992	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs11907218	chr20:15304029-15304030	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs2223946	chr20:15304048-15304049	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:64)

Disease	PMID	Source
Breast cancer	16397240	CNVD
abortions and stillbirths	19751515	CNVD
Wilms tumour	21544195	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	16272173	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Glaucoma	21310917	CNVD
Alagille syndrome	22470819	CNVD
Lung cancer	16773561	CNVD
Renal cell carcinoma	18765545	CNVD
Alagille syndrome	17576883	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
Prostate cancer	18632612	CNVD
Ewing''s sarcoma	18628472	CNVD
Glioblastoma multiforme	18628472	CNVD
Leukemia	18628472	CNVD
Myelofibrosis	22110671	CNVD
Kabuki syndrome	21720541	CNVD
Glioblastoma multiforme	22286061	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Neurocytoma	17123091	CNVD
Glioblastoma multiforme	21138945	CNVD
Cancer	20164919	CNVD
Multiple sclerosis	20663923	CNVD
Schizophrenia	20663923	CNVD
brain infarct	20663923	CNVD
Breast cancer	22522925	CNVD
Cancer	20164920	CNVD
Schizophrenia	23813976	CNVD
Esophageal adenocarcinoma	18519675	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21364760	CNVD
Non-small cell lung cancer	16651412	CNVD

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15302000-15303600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr20:15302200-15303200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr20:15302200-15303800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr20:15302400-15303200	Weak transcription	Fetal Heart	heart
5	chr20:15302400-15303200	Weak transcription	HMEC	breast
6	chr20:15302600-15304800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr20:15303200-15303400	Enhancers	HMEC	breast
8	chr20:15303200-15303800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr20:15303200-15304200	Enhancers	Fetal Heart	heart
10	chr20:15303400-15308800	Weak transcription	HMEC	breast
11	chr20:15303800-15304000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links