Variant report

Variant	nsv585899
Chromosome Location	chr20:29805100-29832022
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3623 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:3623 , 50 per page) page: 1 2 3 4 5 6 7 ... 73

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6141709	chr20:29805100-29805101	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs183668431	chr20:29805101-29805102	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs6141713	chr20:29805106-29805107	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs199685161	chr20:29805118-29805119	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs201073612	chr20:29805120-29805121	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs202164630	chr20:29805123-29805124	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs200165070	chr20:29805124-29805125	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs201351096	chr20:29805125-29805126	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs148191728	chr20:29805138-29805139	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs77875813	chr20:29805139-29805140	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs76206559	chr20:29805140-29805141	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs371041270	chr20:29805141-29805142	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs374452944	chr20:29805156-29805157	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs80213279	chr20:29805158-29805159	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs75149817	chr20:29805159-29805160	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs201025946	chr20:29805160-29805161	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs532489925	chr20:29805174-29805175	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs374095920	chr20:29805179-29805180	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs4013725	chr20:29805183-29805184	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs62206823	chr20:29805184-29805185	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs374307668	chr20:29805185-29805186	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs201561482	chr20:29805199-29805200	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs550034920	chr20:29805202-29805203	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs62206824	chr20:29805204-29805205	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs62206825	chr20:29805206-29805207	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs368288763	chr20:29805207-29805208	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs569267502	chr20:29805210-29805211	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs531486917	chr20:29805215-29805216	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs548513444	chr20:29805219-29805220	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs568156187	chr20:29805221-29805222	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs62636188	chr20:29805223-29805224	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs554013726	chr20:29805229-29805230	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs138105837	chr20:29805240-29805241	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs146106771	chr20:29805250-29805251	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs144976408	chr20:29805255-29805256	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs111691864	chr20:29805273-29805274	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs398121281	chr20:29805277-29805278	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs199964107	chr20:29805278-29805279	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs539557053	chr20:29805294-29805295	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs183190336	chr20:29805298-29805299	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs576033557	chr20:29805303-29805304	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs544568184	chr20:29805323-29805324	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs115856436	chr20:29805324-29805325	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs574791407	chr20:29805325-29805326	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs540396829	chr20:29805338-29805339	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs560328073	chr20:29805343-29805344	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs73117396	chr20:29805352-29805353	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs148751440	chr20:29805355-29805356	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs562738335	chr20:29805375-29805376	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs531773359	chr20:29805377-29805378	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:71)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Autism	22495311	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21806811	CNVD
Melanoma	21693616	CNVD
Astrocytoma	17387387	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
colon cancer	17210682	CNVD
Colorectal cancer	20709793	CNVD
Breast cancer	22028636	CNVD
Breast cancer	21264507	CNVD
Thyroid cancer	19087340	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Soft tissue tumor	16732325	CNVD
Colorectal cancer	19359472	CNVD
Gastric cancer	17167181	CNVD
Myeloproliferative neoplasm	19047681	CNVD
Breast cancer	17899364	CNVD
Colorectal cancer	16272173	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Bladder cancer	21909424	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	22860045	CNVD
Ovarian cancer	20844748	CNVD
Non-small cell lung cancer	21829676	CNVD
Breast cancer	17603634	CNVD
Melanoma	18172304	CNVD
Breast cancer	16608533	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
early-passage human iPS cells	21368824	CNVD
Lung cancer	18438408	CNVD
Gastric cancer	16891809	CNVD
Prostate cancer	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17133270	CNVD
Oral cancer	21386901	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Cancer	20164920	CNVD
Ovarian cancer	21720365	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Gastric cancer	22014070	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Breast cancer	21509527	CNVD

Chromatin state (count:215 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:29803800-29805200	ZNF genes & repeats	Colon Smooth Muscle	Colon
2	chr20:29803800-29806800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
3	chr20:29803800-29807000	ZNF genes & repeats	Colonic Mucosa	Colon
4	chr20:29803800-29809400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr20:29803800-29809800	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr20:29803800-29809800	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
7	chr20:29803800-29811000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
8	chr20:29803800-29811200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr20:29803800-29811200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
10	chr20:29803800-29814000	ZNF genes & repeats	Fetal Heart	heart
11	chr20:29803800-29818600	ZNF genes & repeats	Brain Angular Gyrus	brain
12	chr20:29803800-29833200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr20:29803800-29833200	ZNF genes & repeats	Primary T cells from cord blood	blood
14	chr20:29803800-29833200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
15	chr20:29803800-29833200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
16	chr20:29803800-29833200	ZNF genes & repeats	Brain Hippocampus Middle	brain
17	chr20:29803800-29833200	ZNF genes & repeats	Fetal Kidney	kidney
18	chr20:29803800-29833200	ZNF genes & repeats	Fetal Lung	lung
19	chr20:29803800-29833200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
20	chr20:29803800-29833400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
21	chr20:29803800-29833400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr20:29803800-29833400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr20:29803800-29833400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
24	chr20:29803800-29833400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
25	chr20:29803800-29833400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
26	chr20:29803800-29833400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
27	chr20:29803800-29833400	ZNF genes & repeats	Adipose Nuclei	Adipose
28	chr20:29803800-29833400	ZNF genes & repeats	Liver	Liver
29	chr20:29803800-29833400	ZNF genes & repeats	Brain Substantia Nigra	brain
30	chr20:29803800-29833400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
31	chr20:29803800-29833400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
32	chr20:29803800-29833400	ZNF genes & repeats	Gastric	stomach
33	chr20:29803800-29833400	ZNF genes & repeats	Rectal Smooth Muscle	rectum
34	chr20:29803800-29833400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
35	chr20:29803800-29833400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
36	chr20:29803800-29833600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
37	chr20:29803800-29833600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
38	chr20:29803800-29833800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
39	chr20:29804000-29805200	ZNF genes & repeats	Spleen	Spleen
40	chr20:29804000-29805200	ZNF genes & repeats	HUVEC	blood vessel
41	chr20:29804000-29805400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
42	chr20:29804000-29807000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
43	chr20:29804000-29809200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr20:29804000-29810600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
45	chr20:29804000-29814000	ZNF genes & repeats	GM12878-XiMat	blood
46	chr20:29804000-29833200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
47	chr20:29804000-29833200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
48	chr20:29804000-29833200	ZNF genes & repeats	Dnd41	blood
49	chr20:29804000-29833400	ZNF genes & repeats	Brain Anterior Caudate	brain
50	chr20:29804000-29833400	ZNF genes & repeats	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links