Variant report

Variant	nsv585902
Chromosome Location	chr20:29810691-29830347
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2689 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:2689 , 50 per page) page: 1 2 3 4 5 6 7 ... 54

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6061021	chr20:29810691-29810692	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs539971829	chr20:29810696-29810697	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs145455963	chr20:29810697-29810698	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs190648750	chr20:29810715-29810716	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs200061105	chr20:29810716-29810717	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs535850924	chr20:29810727-29810728	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs141658638	chr20:29810731-29810732	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs114724531	chr20:29810732-29810733	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs12151918	chr20:29810737-29810738	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs572330530	chr20:29810752-29810753	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs527741336	chr20:29810757-29810758	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs540849825	chr20:29810776-29810777	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs564342720	chr20:29810792-29810793	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs577311766	chr20:29810797-29810798	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs371140363	chr20:29810800-29810801	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs563049154	chr20:29810806-29810807	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs561258743	chr20:29810807-29810808	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs375421559	chr20:29810811-29810812	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs542623733	chr20:29810822-29810823	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs368781289	chr20:29810833-29810834	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs200111513	chr20:29810847-29810848	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs552271861	chr20:29810852-29810853	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs547659492	chr20:29810887-29810888	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs531959692	chr20:29810903-29810904	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs571094642	chr20:29810905-29810906	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs566199346	chr20:29810907-29810908	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs550249027	chr20:29810941-29810942	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs375812007	chr20:29810942-29810943	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs528453391	chr20:29810965-29810966	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs535445114	chr20:29810974-29810975	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs77620126	chr20:29810981-29810982	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs555763399	chr20:29810986-29810987	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs6121279	chr20:29810987-29810988	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs534960286	chr20:29810991-29810992	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs142252427	chr20:29810995-29810996	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs557528871	chr20:29810997-29810998	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs577372177	chr20:29811001-29811002	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs543224005	chr20:29811002-29811003	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs6061034	chr20:29811004-29811005	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs150245912	chr20:29811012-29811013	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs573423426	chr20:29811021-29811022	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs542235574	chr20:29811034-29811035	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs559333488	chr20:29811050-29811051	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs527968204	chr20:29811060-29811061	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs202012040	chr20:29811069-29811070	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs370270497	chr20:29811071-29811072	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs143004296	chr20:29811072-29811073	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs113099449	chr20:29811081-29811082	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs386393605	chr20:29811090-29811091	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs79336052	chr20:29811099-29811100	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Autism	22495311	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21806811	CNVD
Melanoma	21693616	CNVD
Astrocytoma	17387387	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
colon cancer	17210682	CNVD
Colorectal cancer	20709793	CNVD
Breast cancer	22028636	CNVD
Breast cancer	21264507	CNVD
Thyroid cancer	19087340	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Soft tissue tumor	16732325	CNVD
Colorectal cancer	19359472	CNVD
Gastric cancer	17167181	CNVD
Myeloproliferative neoplasm	19047681	CNVD
Breast cancer	17899364	CNVD
Colorectal cancer	16272173	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Bladder cancer	21909424	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	22860045	CNVD
Ovarian cancer	20844748	CNVD
Non-small cell lung cancer	21829676	CNVD
Breast cancer	17603634	CNVD
Melanoma	18172304	CNVD
Breast cancer	16608533	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
early-passage human iPS cells	21368824	CNVD
Lung cancer	18438408	CNVD
Gastric cancer	16891809	CNVD
Prostate cancer	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17133270	CNVD
Oral cancer	21386901	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Cancer	20164920	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Gastric cancer	22014070	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Breast cancer	21509527	CNVD

Chromatin state (count:179 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:29803800-29811000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
2	chr20:29803800-29811200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr20:29803800-29811200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
4	chr20:29803800-29814000	ZNF genes & repeats	Fetal Heart	heart
5	chr20:29803800-29818600	ZNF genes & repeats	Brain Angular Gyrus	brain
6	chr20:29803800-29833200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr20:29803800-29833200	ZNF genes & repeats	Primary T cells from cord blood	blood
8	chr20:29803800-29833200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
9	chr20:29803800-29833200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
10	chr20:29803800-29833200	ZNF genes & repeats	Brain Hippocampus Middle	brain
11	chr20:29803800-29833200	ZNF genes & repeats	Fetal Kidney	kidney
12	chr20:29803800-29833200	ZNF genes & repeats	Fetal Lung	lung
13	chr20:29803800-29833200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
14	chr20:29803800-29833400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
15	chr20:29803800-29833400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr20:29803800-29833400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr20:29803800-29833400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
18	chr20:29803800-29833400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
19	chr20:29803800-29833400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
20	chr20:29803800-29833400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
21	chr20:29803800-29833400	ZNF genes & repeats	Adipose Nuclei	Adipose
22	chr20:29803800-29833400	ZNF genes & repeats	Liver	Liver
23	chr20:29803800-29833400	ZNF genes & repeats	Brain Substantia Nigra	brain
24	chr20:29803800-29833400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
25	chr20:29803800-29833400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
26	chr20:29803800-29833400	ZNF genes & repeats	Gastric	stomach
27	chr20:29803800-29833400	ZNF genes & repeats	Rectal Smooth Muscle	rectum
28	chr20:29803800-29833400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
29	chr20:29803800-29833400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
30	chr20:29803800-29833600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
31	chr20:29803800-29833600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
32	chr20:29803800-29833800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
33	chr20:29804000-29814000	ZNF genes & repeats	GM12878-XiMat	blood
34	chr20:29804000-29833200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
35	chr20:29804000-29833200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
36	chr20:29804000-29833200	ZNF genes & repeats	Dnd41	blood
37	chr20:29804000-29833400	ZNF genes & repeats	Brain Anterior Caudate	brain
38	chr20:29804000-29833400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
39	chr20:29804000-29833400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
40	chr20:29804000-29833400	ZNF genes & repeats	Fetal Brain Male	brain
41	chr20:29804000-29833400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
42	chr20:29804000-29833600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
43	chr20:29804200-29833400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
44	chr20:29804400-29833000	ZNF genes & repeats	HepG2	liver
45	chr20:29804400-29833200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
46	chr20:29804400-29833400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
47	chr20:29804600-29829800	ZNF genes & repeats	Primary B cells from cord blood	blood
48	chr20:29805600-29814200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr20:29806000-29811200	ZNF genes & repeats	HUVEC	blood vessel
50	chr20:29806200-29811200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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