Variant report

Variant	nsv588917
Chromosome Location	chr22:33757827-33759983
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:51706606..51707166-chr22:33757749..33758269,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139921	chromatin interactions

Extended variants
information (count: 72 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:72 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs8143073	chr22:33757827-33757828	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs8135033	chr22:33757862-33757863	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs12628388	chr22:33757864-33757865	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs544722358	chr22:33757871-33757872	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs181318956	chr22:33757912-33757913	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs367725641	chr22:33757916-33757917	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs144339254	chr22:33757925-33757926	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs76063683	chr22:33757926-33757927	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs544766682	chr22:33757992-33757993	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs371521831	chr22:33758012-33758013	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs564755814	chr22:33758090-33758091	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs527354615	chr22:33758108-33758109	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs186514402	chr22:33758157-33758158	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs5749607	chr22:33758173-33758174	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs529697610	chr22:33758175-33758176	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs146077477	chr22:33758180-33758181	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs140140516	chr22:33758181-33758182	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs539348697	chr22:33758310-33758311	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs535421896	chr22:33758398-33758399	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs559160139	chr22:33758399-33758400	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs143764300	chr22:33758422-33758423	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs535093965	chr22:33758476-33758477	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs554796385	chr22:33758550-33758551	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs76351052	chr22:33758634-33758635	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs555439115	chr22:33758641-33758642	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs8140321	chr22:33758684-33758685	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs5754537	chr22:33758698-33758699	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs9609768	chr22:33758736-33758737	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs534731432	chr22:33758768-33758769	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs114583751	chr22:33758804-33758805	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs190044348	chr22:33758811-33758812	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs539586243	chr22:33758837-33758838	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs180775772	chr22:33758845-33758846	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs368551997	chr22:33758883-33758884	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs560866652	chr22:33758897-33758898	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs529798618	chr22:33758932-33758933	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs149013607	chr22:33758968-33758969	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs569684661	chr22:33758999-33759000	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs532827066	chr22:33759008-33759009	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs552930046	chr22:33759116-33759117	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs566245698	chr22:33759134-33759135	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs115711752	chr22:33759202-33759203	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs546418367	chr22:33759209-33759210	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs142972018	chr22:33759225-33759226	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs568424433	chr22:33759258-33759259	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs537165782	chr22:33759260-33759261	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs186533662	chr22:33759271-33759272	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs576857472	chr22:33759339-33759340	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs538530527	chr22:33759366-33759367	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs558619559	chr22:33759370-33759371	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Velocardiofacial syndrome	20111667	CNVD
Medulloblastoma	21979893	CNVD
sporadic solitary meningiomas	19589153	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Congenital heart defect	22511896	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Acute myeloid leukemia	16864856	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	17387387	CNVD
Seminomas	18059402	CNVD
Cancer	16751803	CNVD
Metanephric adenoma	20802469	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Metachromatic leukodystrophy	18421352	CNVD
Basal cell lymphoma	17170743	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Breast cancer	21858162	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	16608533	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	22174824	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Wilms tumour	21544195	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
small cell lung cancer	20016488	CNVD
Cancer	21183584	CNVD
Renal cell carcinoma	18765545	CNVD
Schizophrenia	19521646	CNVD
Schizophrenia	18990708	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Hepatocellular carcinoma	16750200	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Autism	19384346	CNVD
Myelofibrosis	22110671	CNVD
muscular dystrophy type 1D	21248746	CNVD
Leukoplakia	24403051	CNVD
Ovarian neoplasms	16753589	CNVD
Deafness	17160897	CNVD
Bipolar disorder	19114987	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Breast cancer	21509527	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Prostate cancer	22341455	CNVD

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33731400-33773400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr22:33731400-33779800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr22:33732600-33760600	Weak transcription	Right Ventricle	heart
4	chr22:33734000-33777800	Weak transcription	Pancreas	Pancrea
5	chr22:33734600-33760600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr22:33738000-33776800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr22:33746400-33759000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr22:33746800-33761400	Weak transcription	Fetal Intestine Small	intestine
9	chr22:33747400-33758000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr22:33747400-33762600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr22:33747400-33768600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr22:33747400-33775600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr22:33748200-33766800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr22:33751400-33763800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr22:33751400-33765000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr22:33751600-33758800	Weak transcription	Aorta	Aorta
17	chr22:33754000-33758000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr22:33755400-33768400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr22:33755600-33758000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr22:33755600-33773600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr22:33757400-33758000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr22:33757400-33758000	Enhancers	Primary B cells from peripheral blood	blood
23	chr22:33757400-33758200	Enhancers	NHDF-Ad	bronchial
24	chr22:33757400-33758400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr22:33757600-33758600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr22:33757600-33761000	Weak transcription	Gastric	stomach
27	chr22:33757800-33758000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr22:33757800-33758200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr22:33757800-33758400	Enhancers	Osteobl	bone
30	chr22:33757800-33758600	Enhancers	Fetal Heart	heart
31	chr22:33757800-33777000	Weak transcription	Fetal Stomach	stomach
32	chr22:33757800-33777200	Weak transcription	Left Ventricle	heart
33	chr22:33758000-33758200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr22:33758000-33758200	Enhancers	HSMMtube	muscle
35	chr22:33758000-33758600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr22:33758000-33758600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr22:33758000-33758600	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr22:33758000-33760200	Weak transcription	Primary B cells from peripheral blood	blood
39	chr22:33758200-33759000	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr22:33758200-33760400	Weak transcription	HSMMtube	muscle
41	chr22:33758400-33768400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr22:33758600-33765000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr22:33758600-33773200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr22:33759000-33759200	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr22:33759400-33759600	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr22:33759800-33760000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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