Variant report

Variant	nsv5901
Chromosome Location	chr7:111428283-111472968
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr7:111443491-111443697	HepG2	liver:	n/a	n/a
2	BHLHE40	chr7:111436856-111436982	K562	blood:	n/a	n/a
3	BRCA1	chr7:111433151-111433155	Hela-S3	cervix:	n/a	n/a
4	CBX3	chr7:111436695-111437223	HCT-116	colon:	n/a	n/a
5	CBX3	chr7:111436678-111437131	K562	blood:	n/a	n/a
6	CBX3	chr7:111436763-111437097	HCT-116	colon:	n/a	n/a
7	CBX3	chr7:111436751-111437276	K562	blood:	n/a	n/a
8	CCNT2	chr7:111446301-111446437	K562	blood:	n/a	n/a
9	CEBPB	chr7:111446379-111446529	H1-hESC	embryonic stem cell:	n/a	chr7:111446448-111446457 chr7:111446446-111446459 chr7:111446446-111446457
10	CEBPB	chr7:111428461-111428796	HepG2	liver:	n/a	chr7:111428558-111428569
11	CEBPB	chr7:111446290-111446634	HepG2	liver:	n/a	chr7:111446448-111446457 chr7:111446446-111446459 chr7:111446446-111446457
12	CEBPB	chr7:111448530-111448987	HepG2	liver:	n/a	chr7:111448898-111448909
13	CEBPB	chr7:111472427-111472559	HepG2	liver:	n/a	n/a
14	CEBPB	chr7:111446280-111446625	IMR90	lung:	n/a	chr7:111446448-111446457 chr7:111446446-111446459 chr7:111446446-111446457
15	CEBPB	chr7:111428532-111428878	IMR90	lung:	n/a	chr7:111428558-111428569
16	CEBPB	chr7:111470225-111470574	Hela-S3	cervix:	n/a	n/a
17	CEBPB	chr7:111446300-111446615	A549	lung:	n/a	chr7:111446448-111446457 chr7:111446446-111446459 chr7:111446446-111446457
18	CEBPB	chr7:111446294-111446609	K562	blood:	n/a	chr7:111446448-111446457 chr7:111446446-111446459 chr7:111446446-111446457
19	CEBPB	chr7:111454857-111454982	A549	lung:	n/a	n/a
20	CEBPB	chr7:111454820-111455020	H1-hESC	embryonic stem cell:	n/a	n/a
21	CEBPB	chr7:111470329-111470524	IMR90	lung:	n/a	n/a
22	CTCF	chr7:111440460-111440793	MCF-7	breast:	n/a	n/a
23	CTCF	chr7:111438459-111438745	A549	lung:	n/a	n/a
24	CTCF	chr7:111438625-111438719	A549	lung:	n/a	n/a
25	CTCF	chr7:111440560-111440710	MCF-7	breast:	n/a	n/a
26	CTCF	chr7:111438623-111438745	A549	lung:	n/a	n/a
27	CTCF	chr7:111440471-111440688	K562	blood:	n/a	n/a
28	CTCF	chr7:111467460-111467610	NHLF	lung:	n/a	n/a
29	CTCF	chr7:111438519-111438809	A549	lung:	n/a	n/a
30	CTCF	chr7:111440484-111440682	K562	blood:	n/a	n/a
31	CTCF	chr7:111440516-111440676	MCF-7	breast:	n/a	n/a
32	CTCF	chr7:111450361-111450420	GM20000	blood:	n/a	n/a
33	CTCF	chr7:111467140-111467290	AG10803	skin:	n/a	n/a
34	CTCF	chr7:111440560-111440644	MCF-7	breast:	n/a	n/a
35	CTCF	chr7:111467880-111468030	GM06990	blood:	n/a	n/a
36	CTCF	chr7:111440540-111440690	MCF-7	breast:	n/a	n/a
37	E2F4	chr7:111470282-111470684	MCF10A-Er-Src	breast:	n/a	n/a
38	E2F4	chr7:111444060-111444376	MCF10A-Er-Src	breast:	n/a	n/a
39	FOS	chr7:111468158-111468510	MCF10A-Er-Src	breast:	n/a	chr7:111468323-111468334 chr7:111468324-111468333 chr7:111468328-111468335 chr7:111468323-111468334
40	FOS	chr7:111468141-111468480	MCF10A-Er-Src	breast:	n/a	chr7:111468323-111468334 chr7:111468324-111468333 chr7:111468328-111468335 chr7:111468323-111468334
41	FOS	chr7:111470287-111470606	MCF10A-Er-Src	breast:	n/a	chr7:111470512-111470523
42	FOS	chr7:111470321-111470627	HUVEC	blood vessel:	n/a	chr7:111470512-111470523
43	FOS	chr7:111470234-111470607	MCF10A-Er-Src	breast:	n/a	chr7:111470512-111470523
44	FOS	chr7:111468113-111468520	MCF10A-Er-Src	breast:	n/a	chr7:111468323-111468334 chr7:111468324-111468333 chr7:111468328-111468335 chr7:111468323-111468334
45	FOS	chr7:111468108-111468520	MCF10A-Er-Src	breast:	n/a	chr7:111468323-111468334 chr7:111468324-111468333 chr7:111468328-111468335 chr7:111468323-111468334
46	FOS	chr7:111468162-111468530	HUVEC	blood vessel:	n/a	chr7:111468323-111468334 chr7:111468324-111468333 chr7:111468328-111468335 chr7:111468323-111468334
47	FOS	chr7:111470282-111470729	MCF10A-Er-Src	breast:	n/a	chr7:111470512-111470523
48	FOS	chr7:111470281-111470708	MCF10A-Er-Src	breast:	n/a	chr7:111470512-111470523
49	FOSL2	chr7:111468017-111468665	SK-N-SH	brain:	n/a	chr7:111468084-111468095 chr7:111468323-111468334 chr7:111468324-111468333 chr7:111468328-111468335
50	FOSL2	chr7:111468099-111468551	MCF-7	breast:	n/a	chr7:111468323-111468334 chr7:111468324-111468333 chr7:111468328-111468335

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:111429705-111429755	HUVEC	blood vessel:	n/a
2	chr7:111429705-111429755	SK-N-SH_RA	brain:	n/a
3	chr7:111429705-111429755	NH-A	brain:	n/a
4	chr7:111429705-111429755	NT2-D1	testis:	n/a
5	chr7:111429705-111429755	ovcar-3	ovarian:	n/a
6	chr7:111430583-111430633	AG04449	skin:	fetal
7	chr7:111430583-111430633	HCF	heart:	n/a
8	chr7:111429705-111429755	AG10803	skin:	n/a
9	chr7:111430583-111430633	BE2_C	brain:	n/a
10	chr7:111429705-111429755	H1-hESC	embryonic stem cell:	embryo
11	chr7:111430583-111430633	HIPEpiC	eye:	n/a
12	chr7:111430583-111430633	SK-N-SH	brain:	n/a
13	chr7:111430583-111430633	GM06990	blood:	n/a
14	chr7:111429705-111429755	Hela-S3	cervix:	n/a
15	chr7:111430583-111430633	SAEC	small airway:	n/a
16	chr7:111429705-111429755	MCF10A-Er-Src	breast:	n/a
17	chr7:111429705-111429755	CMK	blood:	n/a
18	chr7:111430583-111430633	GM12891	blood:	n/a
19	chr7:111429705-111429755	PANC-1	pancreas:	n/a
20	chr7:111429705-111429755	HRPEpiC	eye:	n/a
21	chr7:111429705-111429755	GM12891	blood:	n/a
22	chr7:111430583-111430633	LNCaP	prostate:	n/a
23	chr7:111429705-111429755	HMEC	breast:	n/a
24	chr7:111430583-111430633	BJ	skin:	n/a
25	chr7:111429705-111429755	LNCaP	prostate:	n/a
26	chr7:111429705-111429755	PrEC	prostate:	n/a
27	chr7:111429705-111429755	HL-60	blood:	n/a
28	chr7:111429705-111429755	Jurkat	blood:	n/a
29	chr7:111429705-111429755	HNPCEpiC	eye:	n/a
30	chr7:111430583-111430633	GM19239	blood:	n/a
31	chr7:111429705-111429755	GM06990	blood:	n/a
32	chr7:111430583-111430633	U87	brain:	n/a
33	chr7:111429705-111429755	PFSK-1	brain:	n/a
34	chr7:111430583-111430633	HRCEpiC	kidney:	n/a
35	chr7:111429705-111429755	AG09309	skin:	n/a
36	chr7:111429705-111429755	HRCEpiC	kidney:	n/a
37	chr7:111429705-111429755	HCF	heart:	n/a
38	chr7:111430583-111430633	Hepatocyte	liver:	n/a
39	chr7:111429705-111429755	HPAEpiC	pulmonary alveolar:	n/a
40	chr7:111429705-111429755	NHDF-neo	bronchial:	n/a
41	chr7:111430583-111430633	T-47D	breast:	n/a
42	chr7:111429705-111429755	T-47D	breast:	n/a
43	chr7:111430583-111430633	HEEpiC	esophagus:	n/a
44	chr7:111430583-111430633	NHDF-neo	bronchial:	n/a
45	chr7:111429705-111429755	HepG2	liver:	n/a
46	chr7:111430583-111430633	HRE	kidney:	n/a
47	chr7:111430583-111430633	RPTEC	kidney:	n/a
48	chr7:111430583-111430633	ProgFib	skin:	n/a
49	chr7:111430583-111430633	HMEC	breast:	n/a
50	chr7:111429705-111429755	SKMC	muscle:	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:111470624..111472715-chr7:111474213..111475789,2	K562	blood:
2	chr7:111465642..111467754-chr7:111468604..111470523,2	K562	blood:
3	chr7:111441157..111443026-chr7:111452220..111453748,2	K562	blood:
4	chr7:111459645..111462383-chr7:111465002..111466906,2	MCF-7	breast:
5	chr7:111424885..111427263-chr7:111430297..111431978,2	MCF-7	breast:
6	chr7:111456789..111459447-chr7:111459893..111461688,2	MCF-7	breast:
7	chr7:111469400..111471141-chr7:111474178..111476369,2	MCF-7	breast:
8	chr7:111422187..111425085-chr7:111449056..111451796,2	K562	blood:
9	chr7:111433541..111435284-chr7:111437283..111439571,2	K562	blood:
10	chr7:111441157..111443026-chr7:111452220..111453748,2	K562	blood:
11	chr7:111433541..111435284-chr7:111437283..111439571,2	K562	blood:
12	chr7:111472245..111474345-chr7:111476816..111478687,2	MCF-7	breast:
13	chr7:111456789..111459447-chr7:111459893..111461688,2	MCF-7	breast:
14	chr7:111451753..111453713-chr7:112089453..112090991,2	MCF-7	breast:
15	chr7:111406292..111408372-chr7:111436038..111438457,2	K562	blood:
16	chr7:111403064..111403857-chr7:111440015..111440911,2	MCF-7	breast:
17	chr7:111465642..111467754-chr7:111468604..111470523,2	K562	blood:
18	chr7:111441157..111443495-chr7:111452248..111454661,2	K562	blood:
19	chr7:111441157..111443495-chr7:111452248..111454661,2	K562	blood:
20	chr7:111407587..111409564-chr7:111436664..111438412,2	MCF-7	breast:
21	chr7:111459645..111462383-chr7:111465002..111466906,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF277-1	chr7:111459434-111461829	ENSG00000225572.1
2	lnc-ZNF277-1	chr7:111459434-111461835	NONHSAT122774
3	lnc-ZNF277-1	chr7:111448572-111448669	ENSG00000225572.1
4	lnc-ZNF277-1	chr7:111448561-111448669	NONHSAT122774

Variant related genes	Relation type
DOCK4-AS1	TF binding region
DOCK4	TF binding region
DOCK4-AS1	CpG island
DOCK4	CpG island
ENSG00000128512	chromatin interactions
ENSG00000006652	chromatin interactions

Extended variants
information (count: 1537 )
Associated
traits (count: 91 )

Variant overlapped rSNPs/rCNVs (count:1537 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs372849182	chr7:111428334-111428335	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs527699792	chr7:111428401-111428402	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs148034394	chr7:111428412-111428413	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs552826499	chr7:111428437-111428438	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs572885442	chr7:111428455-111428456	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs540353855	chr7:111428489-111428490	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs114568335	chr7:111428552-111428553	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs141666231	chr7:111428553-111428554	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs147170180	chr7:111428572-111428573	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs193097725	chr7:111428610-111428611	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs140433419	chr7:111428644-111428645	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs144178244	chr7:111428700-111428701	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs368005888	chr7:111428711-111428712	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs367545315	chr7:111428719-111428720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs370629123	chr7:111428747-111428748	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs548719991	chr7:111428768-111428769	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs374796399	chr7:111428783-111428784	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs201892749	chr7:111428787-111428788	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
19	rs200443099	chr7:111428810-111428811	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs185523470	chr7:111428836-111428837	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs147364278	chr7:111428871-111428872	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs571356562	chr7:111428872-111428873	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs532216349	chr7:111428914-111428915	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
24	rs550722945	chr7:111429019-111429020	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs151195955	chr7:111429035-111429036	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs375260618	chr7:111429041-111429042	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
27	rs569072953	chr7:111429074-111429075	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs536582059	chr7:111429118-111429119	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs34597394	chr7:111429171-111429172	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs538136420	chr7:111429184-111429185	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs188215758	chr7:111429375-111429376	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
32	rs572836408	chr7:111429410-111429411	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs566571215	chr7:111429411-111429412	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs180735142	chr7:111429423-111429424	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
35	rs183547836	chr7:111429437-111429438	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
36	rs188683996	chr7:111429476-111429477	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
37	rs377115062	chr7:111429579-111429580	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs544502883	chr7:111429590-111429591	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs139405288	chr7:111429638-111429639	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs181291278	chr7:111429658-111429659	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs186968471	chr7:111429677-111429678	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs542539553	chr7:111429739-111429740	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
43	rs560764419	chr7:111429823-111429824	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
44	rs535580839	chr7:111429860-111429861	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
45	rs12671999	chr7:111429882-111429883	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs150064014	chr7:111429902-111429903	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
47	rs564994235	chr7:111429914-111429915	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
48	rs564786156	chr7:111429966-111429967	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
49	rs572143359	chr7:111430020-111430021	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
50	rs532197953	chr7:111430070-111430071	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:91)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	16864856	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21785460	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	17053054	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
Myelofibrosis	22110671	CNVD
Squamous cell cancer	20885788	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Breast cancer	16397240	CNVD
Biliary cancer	19435499	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Prostate cancer	23792589	CNVD
Adenocarcinoma	21044232	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Autism	19401682	CNVD
Non-small cell lung cancer	19889201	CNVD
Acute myeloid leukemia	18000384	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Metastatic melanoma	18483359	CNVD
Autism	18414403	CNVD
Autism	19546859	CNVD
Schizophrenia	19546859	CNVD
Tourette syndrome	19546859	CNVD
Melanoma	19188590	CNVD
small cell lung cancer	20016488	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Autism	20841430	CNVD
Cancer	20164919	CNVD
Melanoma	20877625	CNVD
Breast cancer	22522925	CNVD
Glioblastoma multiforme	20824129	CNVD
Chordoma	21215367	CNVD
Pancreatic cancer	17952125	CNVD
T-cell lymphomas	22341440	CNVD

Chromatin state (count:593 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:111379600-111433600	Weak transcription	Esophagus	oesophagus
2	chr7:111390400-111435600	Weak transcription	Psoas Muscle	Psoas
3	chr7:111390600-111431800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr7:111398000-111435000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:111398200-111434000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:111399000-111432800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr7:111400400-111435800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr7:111404600-111435400	Weak transcription	NHEK	skin
9	chr7:111406800-111435600	Weak transcription	Osteobl	bone
10	chr7:111409400-111433000	Weak transcription	Colon Smooth Muscle	Colon
11	chr7:111409400-111434000	Weak transcription	Fetal Brain Female	brain
12	chr7:111410600-111429800	Weak transcription	HepG2	liver
13	chr7:111412000-111433000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:111412000-111435800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr7:111414600-111430200	Strong transcription	Liver	Liver
16	chr7:111416000-111433000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr7:111417200-111431600	Weak transcription	Fetal Stomach	stomach
18	chr7:111417200-111433200	Weak transcription	Placenta	Placenta
19	chr7:111417200-111435200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr7:111417800-111428600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:111417800-111429800	Weak transcription	Pancreas	Pancrea
22	chr7:111417800-111430200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:111418000-111428400	Weak transcription	Fetal Kidney	kidney
24	chr7:111418000-111428600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr7:111418000-111428600	Weak transcription	Aorta	Aorta
26	chr7:111418000-111429600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr7:111418000-111429800	Weak transcription	Left Ventricle	heart
28	chr7:111418000-111429800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr7:111418000-111433000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr7:111418000-111434400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr7:111418400-111429800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr7:111418400-111430200	Weak transcription	Lung	lung
33	chr7:111418400-111433800	Weak transcription	Brain Germinal Matrix	brain
34	chr7:111418400-111435600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr7:111418600-111428400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr7:111418600-111429000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr7:111418600-111429600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr7:111418600-111429600	Weak transcription	Ovary	ovary
39	chr7:111418600-111429600	Weak transcription	Stomach Smooth Muscle	stomach
40	chr7:111418600-111429800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr7:111419800-111430400	Weak transcription	Gastric	stomach
42	chr7:111419800-111435400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr7:111422400-111428400	Weak transcription	Adipose Nuclei	Adipose
44	chr7:111422600-111430600	Strong transcription	HUVEC	blood vessel
45	chr7:111423600-111435600	Weak transcription	Right Ventricle	heart
46	chr7:111424400-111429200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr7:111424600-111429800	Weak transcription	Brain Anterior Caudate	brain
48	chr7:111425400-111429800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr7:111426000-111435200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr7:111426200-111428400	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links