Variant report

Variant	nsv590920
Chromosome Location	chr3:87960246-87969562
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 209 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:209 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2919267	chr3:87960246-87960247	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs546864300	chr3:87960254-87960255	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs564957191	chr3:87960263-87960264	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs117936050	chr3:87960271-87960272	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs141351031	chr3:87960281-87960282	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs62267047	chr3:87960285-87960286	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs532032242	chr3:87960297-87960298	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs150787063	chr3:87960310-87960311	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs537082855	chr3:87960432-87960433	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs549240827	chr3:87960439-87960440	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs184349744	chr3:87960440-87960441	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs534882068	chr3:87960466-87960467	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs62267048	chr3:87960473-87960474	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs144081632	chr3:87960477-87960478	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs538749008	chr3:87960485-87960486	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs79379364	chr3:87960492-87960493	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs556651052	chr3:87960603-87960604	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs570668158	chr3:87960656-87960657	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs146826974	chr3:87960685-87960686	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs542673688	chr3:87960711-87960712	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs561164628	chr3:87960738-87960739	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs72913758	chr3:87960769-87960770	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs375297952	chr3:87960787-87960788	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs540381968	chr3:87960850-87960851	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs188395764	chr3:87960868-87960869	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs2915289	chr3:87960871-87960872	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs552746033	chr3:87960891-87960892	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs551835877	chr3:87960900-87960901	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs563657073	chr3:87960902-87960903	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs115673653	chr3:87960966-87960967	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs549003596	chr3:87960967-87960968	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs191754299	chr3:87960992-87960993	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs139612296	chr3:87960996-87960997	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs546764069	chr3:87961014-87961015	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs562852917	chr3:87961021-87961022	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs370821404	chr3:87961069-87961070	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs11709859	chr3:87961086-87961087	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs371467094	chr3:87961090-87961091	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs144237539	chr3:87961096-87961097	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs567147690	chr3:87961131-87961132	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs556998042	chr3:87961186-87961187	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs35812983	chr3:87961198-87961199	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs531785842	chr3:87961223-87961224	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs575293873	chr3:87961229-87961230	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs2195714	chr3:87961261-87961262	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs183534133	chr3:87961330-87961331	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs573146695	chr3:87961338-87961339	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs540547899	chr3:87961349-87961350	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs201239929	chr3:87961350-87961351	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs558611514	chr3:87961361-87961362	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Wilms tumour	21544195	CNVD
Soft tissue tumor	16732325	CNVD
small cell lung cancer	20016488	CNVD
Neurodevelopmental disorder	22521361	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
craniofacial dysmorphism	21918468	CNVD
Cancer	20164920	CNVD
Non-small cell lung cancer	21829676	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:87953000-87964800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:87957800-87960400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
3	chr3:87963400-87964600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:87963600-87964200	Enhancers	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links