Variant report

Variant	nsv593553
Chromosome Location	chr4:7044324-7045760
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:575)
CpG islands
(count:855)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:575 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr4:7044760-7044954	K562	blood:	n/a	n/a
2	ARID3A	chr4:7044722-7044922	HepG2	liver:	n/a	n/a
3	BACH1	chr4:7044587-7045024	H1-hESC	embryonic stem cell:	n/a	n/a
4	BHLHE40	chr4:7045671-7046237	GM12878	blood:	n/a	n/a
5	BHLHE40	chr4:7044618-7045423	GM12878	blood:	n/a	chr4:7044926-7044942 chr4:7044684-7044700
6	BHLHE40	chr4:7044640-7044927	K562	blood:	n/a	chr4:7044684-7044700
7	BHLHE40	chr4:7045367-7045662	K562	blood:	n/a	n/a
8	BHLHE40	chr4:7044156-7044392	K562	blood:	n/a	n/a
9	BRCA1	chr4:7044749-7044921	Hela-S3	cervix:	n/a	n/a
10	CBX3	chr4:7044684-7044922	K562	blood:	n/a	n/a
11	CCNT2	chr4:7044207-7046106	K562	blood:	n/a	n/a
12	CEBPB	chr4:7045752-7045963	IMR90	lung:	n/a	n/a
13	CEBPB	chr4:7045713-7046083	K562	blood:	n/a	n/a
14	CEBPB	chr4:7045725-7046023	A549	lung:	n/a	n/a
15	CEBPB	chr4:7045729-7046021	HepG2	liver:	n/a	n/a
16	CEBPB	chr4:7045622-7045965	Hela-S3	cervix:	n/a	n/a
17	CEBPD	chr4:7044885-7045231	HepG2	liver:	n/a	n/a
18	CHD1	chr4:7045356-7045857	GM12878	blood:	n/a	n/a
19	CHD1	chr4:7045256-7046943	IMR90	lung:	n/a	n/a
20	CHD2	chr4:7045639-7045945	Hela-S3	cervix:	n/a	n/a
21	CHD2	chr4:7044530-7045008	GM12878	blood:	n/a	chr4:7044936-7044946
22	CHD2	chr4:7044591-7045017	K562	blood:	n/a	chr4:7044936-7044946
23	CHD2	chr4:7044618-7044979	H1-hESC	embryonic stem cell:	n/a	chr4:7044936-7044946
24	CHD2	chr4:7045380-7045488	HepG2	liver:	n/a	n/a
25	CHD2	chr4:7044505-7045125	Hela-S3	cervix:	n/a	chr4:7044936-7044946
26	CHD2	chr4:7045316-7045828	GM12878	blood:	n/a	n/a
27	CHD2	chr4:7044478-7044859	HepG2	liver:	n/a	n/a
28	CREB1	chr4:7044536-7045007	HepG2	liver:	n/a	n/a
29	CREB1	chr4:7044477-7045156	GM12878	blood:	n/a	n/a
30	CREB1	chr4:7044497-7045106	H1-hESC	embryonic stem cell:	n/a	n/a
31	CREB1	chr4:7044100-7046023	HepG2	liver:	n/a	n/a
32	CREB1	chr4:7044570-7045005	ECC-1	luminal epithelium:	n/a	n/a
33	CREB1	chr4:7044526-7045083	H1-hESC	embryonic stem cell:	n/a	n/a
34	CREB1	chr4:7044532-7045192	A549	lung:	n/a	n/a
35	CTCF	chr4:7045760-7045910	GM12871	blood:	n/a	n/a
36	CTCF	chr4:7044820-7045050	SAEC	small airway:	n/a	n/a
37	CTCF	chr4:7044900-7045050	GM12874	blood:	n/a	n/a
38	CTCF	chr4:7045440-7045590	SAEC	small airway:	n/a	n/a
39	CTCF	chr4:7044912-7045125	GM20000	blood:	n/a	n/a
40	CTCF	chr4:7044892-7045071	Lung_OC	lung:	n/a	n/a
41	CTCF	chr4:7044891-7045145	Gliobla	brain:	n/a	n/a
42	CTCF	chr4:7044940-7045090	GM12867	blood:	n/a	n/a
43	CTCF	chr4:7044920-7045070	AG09319	gingival:	n/a	n/a
44	CTCF	chr4:7044910-7045141	Fibrobl	skin:	n/a	n/a
45	CTCF	chr4:7044880-7045030	HUVEC	blood vessel:	n/a	n/a
46	CTCF	chr4:7044790-7045176	K562	blood:	n/a	n/a
47	CTCF	chr4:7044907-7045151	NHEK	skin:	n/a	n/a
48	CTCF	chr4:7044920-7045070	SK-N-SH_RA	brain:	n/a	n/a
49	CTCF	chr4:7044915-7045130	SK-N-SH_RA	brain:	n/a	n/a
50	CTCF	chr4:7044883-7045128	GM12878	blood:	n/a	n/a

(count:855 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:7044978-7045028	AG09309	skin:	n/a
2	chr4:7044978-7045028	AG09309	skin:	n/a
3	chr4:7044873-7044923	NHBE	bronchial:	n/a
4	chr4:7044873-7044923	NB4	blood:	n/a
5	chr4:7044968-7045018	SKMC	muscle:	n/a
6	chr4:7045168-7045218	GM12892	blood:	n/a
7	chr4:7044990-7045040	GM06990	blood:	n/a
8	chr4:7044737-7044787	A549	lung:	n/a
9	chr4:7044735-7044785	GM06990	blood:	n/a
10	chr4:7044863-7044913	T-47D	breast:	n/a
11	chr4:7044859-7044909	T-47D	breast:	n/a
12	chr4:7044968-7045018	HRE	kidney:	n/a
13	chr4:7044990-7045040	AG09309	skin:	n/a
14	chr4:7044735-7044785	NH-A	brain:	n/a
15	chr4:7044978-7045028	SK-N-SH	brain:	n/a
16	chr4:7045168-7045218	HRE	kidney:	n/a
17	chr4:7045720-7045770	ovcar-3	ovarian:	n/a
18	chr4:7044863-7044913	GM12891	blood:	n/a
19	chr4:7044859-7044909	HCPEpiC	choroid plexus:	n/a
20	chr4:7044968-7045018	ovcar-3	ovarian:	n/a
21	chr4:7044859-7044909	BJ	skin:	n/a
22	chr4:7045720-7045770	HUVEC	blood vessel:	n/a
23	chr4:7044735-7044785	HCF	heart:	n/a
24	chr4:7044735-7044785	BE2_C	brain:	n/a
25	chr4:7044595-7044645	A549	lung:	n/a
26	chr4:7044978-7045028	MCF10A-Er-Src	breast:	n/a
27	chr4:7044981-7045031	HRPEpiC	eye:	n/a
28	chr4:7044859-7044909	AG04450	lung:	fetal
29	chr4:7044981-7045031	HNPCEpiC	eye:	n/a
30	chr4:7044863-7044913	Hela-S3	cervix:	n/a
31	chr4:7044981-7045031	HRCEpiC	kidney:	n/a
32	chr4:7044873-7044923	PrEC	prostate:	n/a
33	chr4:7044595-7044645	BJ	skin:	n/a
34	chr4:7044873-7044923	HPAEpiC	pulmonary alveolar:	n/a
35	chr4:7044863-7044913	LNCaP	prostate:	n/a
36	chr4:7044737-7044787	PANC-1	pancreas:	n/a
37	chr4:7045183-7045233	MCF-7	breast:	n/a
38	chr4:7044595-7044645	ProgFib	skin:	n/a
39	chr4:7044737-7044787	GM19239	blood:	n/a
40	chr4:7044863-7044913	PFSK-1	brain:	n/a
41	chr4:7044968-7045018	LNCaP	prostate:	n/a
42	chr4:7044968-7045018	RPTEC	kidney:	n/a
43	chr4:7044873-7044923	LNCaP	prostate:	n/a
44	chr4:7045720-7045770	SK-N-MC	brain:	n/a
45	chr4:7045720-7045770	HRCEpiC	kidney:	n/a
46	chr4:7045720-7045770	PFSK-1	brain:	n/a
47	chr4:7044968-7045018	ProgFib	skin:	n/a
48	chr4:7045168-7045218	SK-N-MC	brain:	n/a
49	chr4:7044978-7045028	A549	lung:	n/a
50	chr4:7045720-7045770	AG04449	skin:	fetal

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:6909683..6913053-chr4:7043553..7046923,6	MCF-7	breast:
2	chr4:6674690..6677394-chr4:7044280..7046366,2	K562	blood:
3	chr11:58345437..58346957-chr4:7043706..7045674,2	K562	blood:
4	chr4:7041999..7051916-chr4:7066728..7075643,37	MCF-7	breast:
5	chr4:7000132..7002859-chr4:7044384..7046741,2	MCF-7	breast:
6	chr4:7042421..7051559-chr4:7062214..7072674,24	MCF-7	breast:
7	chr4:6987653..6990708-chr4:7043238..7045970,4	MCF-7	breast:
8	chr4:6909981..6913772-chr4:7044379..7047071,5	MCF-7	breast:
9	chr4:6711584..6713629-chr4:7043225..7044994,2	MCF-7	breast:
10	chr4:7043790..7046279-chr4:7102506..7105292,2	K562	blood:
11	chr4:7044811..7045632-chr4:7069385..7070353,2	NB4	blood:
12	chr4:6999660..7002155-chr4:7043088..7045317,3	MCF-7	breast:
13	chr10:79691250..79693205-chr4:7045398..7046907,2	MCF-7	breast:
14	chr4:7031028..7032644-chr4:7045295..7046851,2	MCF-7	breast:

No data

Variant related genes	Relation type
TADA2B	TF binding region
CCDC96	TF binding region
TADA2B	CpG island
CCDC96	CpG island
ENSG00000251580	chromatin interactions
ENSG00000186660	chromatin interactions
ENSG00000178988	chromatin interactions
ENSG00000132405	chromatin interactions
ENSG00000110031	chromatin interactions
ENSG00000170846	chromatin interactions
ENSG00000255073	chromatin interactions
ENSG00000109519	chromatin interactions
ENSG00000245468	chromatin interactions

Extended variants
information (count: 39 )
Associated
traits (count: 53 )

Variant overlapped rSNPs/rCNVs (count:39 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs871133	chr4:7044357-7044358	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	10 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs555516788	chr4:7044366-7044367	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
3	rs573851271	chr4:7044377-7044378	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
4	rs871134	chr4:7044380-7044381	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	10 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs112443376	chr4:7044441-7044442	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
6	rs562714159	chr4:7044444-7044445	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
7	rs533254093	chr4:7044470-7044471	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
8	rs547781848	chr4:7044543-7044544	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
9	rs544978758	chr4:7044558-7044559	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
10	rs560456730	chr4:7044585-7044586	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
11	rs372279731	chr4:7044591-7044592	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
12	rs2359010	chr4:7044600-7044601	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
13	rs549040452	chr4:7044615-7044616	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
14	rs535061373	chr4:7044630-7044631	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
15	rs567402403	chr4:7044658-7044659	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
16	rs370057062	chr4:7044664-7044665	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
17	rs374155375	chr4:7044674-7044675	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
18	rs549950164	chr4:7044686-7044687	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
19	rs530149078	chr4:7044700-7044701	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
20	rs192060165	chr4:7044730-7044731	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
21	rs539270710	chr4:7044766-7044767	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
22	rs554177563	chr4:7044769-7044770	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
23	rs566428698	chr4:7044776-7044777	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
24	rs533573428	chr4:7044827-7044828	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
25	rs555428951	chr4:7044871-7044872	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
26	rs573771740	chr4:7044898-7044899	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
27	rs181720442	chr4:7044989-7044990	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
28	rs556347219	chr4:7044990-7044991	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
29	rs36033483	chr4:7045069-7045070	Active TSS Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
30	rs568868093	chr4:7045070-7045071	Active TSS Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
31	rs187414023	chr4:7045081-7045082	Active TSS Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
32	rs577771038	chr4:7045347-7045348	Active TSS Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
33	rs545256401	chr4:7045417-7045418	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
34	rs560212756	chr4:7045552-7045553	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
35	rs190740257	chr4:7045583-7045584	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
36	rs542598584	chr4:7045592-7045593	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
37	rs6842659	chr4:7045657-7045658	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
38	rs531686976	chr4:7045685-7045686	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
39	rs182267044	chr4:7045748-7045749	Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:53)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Melanoma	20688739	CNVD
Colorectal cancer	16272173	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17603634	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	17533364	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Cancer	21637783	CNVD
Melanoma	21693616	CNVD
Squamous cell cancer	21044232	CNVD
Colorectal cancer	20709793	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Non-small cell lung cancer	21044232	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Cervical cancer	21062161	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Neuroblastoma	18923191	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Prostate cancer	18632612	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Breast cancer	21509527	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Schizophrenia	22241247	CNVD
Autosomal-dominant microtia	18179897	CNVD
Glioma	17123091	CNVD
Colorectal cancer	20459617	CNVD
Breast cancer	17133270	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:210 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7013200-7044400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr4:7043200-7044600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr4:7043200-7044600	Flanking Active TSS	Stomach Smooth Muscle	stomach
4	chr4:7043400-7044400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr4:7043400-7044400	Flanking Active TSS	Brain Hippocampus Middle	brain
6	chr4:7043400-7044600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
7	chr4:7043400-7046600	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr4:7043600-7044400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
9	chr4:7043600-7044400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
10	chr4:7043600-7044400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:7043600-7044400	Flanking Active TSS	Fetal Muscle Leg	muscle
12	chr4:7043600-7044600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
13	chr4:7043600-7044600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:7043600-7044600	Flanking Active TSS	Liver	Liver
15	chr4:7043600-7044600	Flanking Active TSS	HMEC	breast
16	chr4:7043600-7044800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
17	chr4:7043600-7044800	Flanking Active TSS	Primary B cells from cord blood	blood
18	chr4:7043600-7046600	Active TSS	Fetal Kidney	kidney
19	chr4:7043600-7046600	Active TSS	A549	lung
20	chr4:7043800-7044400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
21	chr4:7043800-7044400	Flanking Active TSS	Spleen	Spleen
22	chr4:7043800-7044600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
23	chr4:7043800-7044800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
24	chr4:7043800-7044800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
25	chr4:7043800-7044800	Flanking Active TSS	Primary hematopoietic stem cells	blood
26	chr4:7043800-7044800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr4:7043800-7045000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr4:7043800-7045600	Weak transcription	Fetal Heart	heart
29	chr4:7043800-7045800	Active TSS	Primary T cells from cord blood	blood
30	chr4:7043800-7046200	Active TSS	Hela-S3	cervix
31	chr4:7043800-7046400	Active TSS	Aorta	Aorta
32	chr4:7043800-7046400	Active TSS	Colon Smooth Muscle	Colon
33	chr4:7043800-7046400	Active TSS	Small Intestine	intestine
34	chr4:7043800-7046400	Active TSS	NHDF-Ad	bronchial
35	chr4:7043800-7046600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr4:7044000-7044400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
37	chr4:7044000-7044400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
38	chr4:7044000-7044400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
39	chr4:7044000-7044400	Flanking Active TSS	Brain Germinal Matrix	brain
40	chr4:7044000-7044400	Flanking Active TSS	Fetal Brain Male	brain
41	chr4:7044000-7044400	Bivalent/Poised TSS	Fetal Thymus	thymus
42	chr4:7044000-7044600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr4:7044000-7044800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
44	chr4:7044000-7044800	Flanking Active TSS	Dnd41	blood
45	chr4:7044000-7045000	Bivalent/Poised TSS	Thymus	Thymus
46	chr4:7044000-7045600	Active TSS	Placenta Amnion	Placenta Amnion
47	chr4:7044000-7046000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr4:7044000-7046000	Active TSS	Brain Anterior Caudate	brain
49	chr4:7044000-7046000	Active TSS	Lung	lung
50	chr4:7044000-7046000	Active TSS	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links