Variant report

Variant	nsv595443
Chromosome Location	chr4:132820882-132872632
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PCDH10-16	chr4:132834360-132834427	NONHSAT098318
2	lnc-RP11-62N21.1.1-2	chr4:132854661-132854803	ENSG00000251555
3	lnc-PCDH10-16	chr4:132835557-132837346	NONHSAT098318
4	lnc-RP11-62N21.1.1-2	chr4:132851186-132851466	ENSG00000251555
5	lnc-PCDH10-16	chr4:132833286-132833387	NONHSAT098318

Extended variants
information (count: 317 )
Associated
traits (count: 80 )

Variant overlapped rSNPs/rCNVs (count:317 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs542765169	chr4:132821856-132821857	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs553298499	chr4:132821861-132821862	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs573298034	chr4:132821946-132821947	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs545448220	chr4:132821948-132821949	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs6841801	chr4:132821961-132821962	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs189491755	chr4:132821985-132821986	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs62307223	chr4:132822052-132822053	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs6841817	chr4:132822080-132822081	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs531274622	chr4:132822114-132822115	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs532112597	chr4:132822134-132822135	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs62307224	chr4:132822152-132822153	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs552213753	chr4:132822210-132822211	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs561323894	chr4:132822215-132822216	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs528940553	chr4:132822235-132822236	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs77337236	chr4:132822238-132822239	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs200299131	chr4:132822274-132822275	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs548818689	chr4:132822305-132822306	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs201553487	chr4:132822341-132822342	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs191899158	chr4:132822354-132822355	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs182351499	chr4:132833315-132833316	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs370415154	chr4:132833325-132833326	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs550153151	chr4:132833337-132833338	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs187673881	chr4:132833372-132833373	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs141376330	chr4:132834372-132834373	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs564330944	chr4:132834380-132834381	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs189766509	chr4:132834393-132834394	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs571604970	chr4:132835560-132835561	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs2456960	chr4:132835630-132835631	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs188215018	chr4:132835668-132835669	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs562206113	chr4:132835698-132835699	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs62308473	chr4:132835714-132835715	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs567641687	chr4:132835723-132835724	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs193108897	chr4:132835742-132835743	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs3961440	chr4:132835778-132835779	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs553692938	chr4:132835852-132835853	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs573526656	chr4:132835857-132835858	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs111645873	chr4:132835865-132835866	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs185363098	chr4:132835887-132835888	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs559112323	chr4:132835888-132835889	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs577628296	chr4:132836003-132836004	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs543134119	chr4:132836009-132836010	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs563073388	chr4:132836010-132836011	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs529373655	chr4:132836105-132836106	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs115615901	chr4:132836131-132836132	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs189767270	chr4:132836155-132836156	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs559387908	chr4:132836173-132836174	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs200311928	chr4:132836206-132836207	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs201178313	chr4:132836210-132836211	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs191896715	chr4:132836266-132836267	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs551247370	chr4:132836360-132836361	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:80)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	21183584	CNVD
primary effusion lymphomas	17116491	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Esophageal cancer	21851588	CNVD
Colorectal cancer	16272173	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Neuroblastoma	21899760	CNVD
Renal cell carcinoma	18194544	CNVD
Olfactory neuroblastoma	18408657	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20459617	CNVD
Lung squamous cell carcinoma	22363434	CNVD
Mental retardation	17847001	CNVD
Myelofibrosis	22110671	CNVD
Autism	18923514	CNVD
Autism	22241247	CNVD
Mental retardation	17901693	CNVD
Anaplastic thyroid cancer	18753363	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Schizophrenia	20967226	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:132821800-132822400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:132857800-132858200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:132860200-132860600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:132868200-132869000	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr4:132869000-132871000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr4:132872200-132872800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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